Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq9 102 8e-17
seq20 96.9 3e-15
>seq9
Length=63840602
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955
|||||||| || || ||||| || ||||| || | ||| ||||| | |||| ||| ||
Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493
Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14015
| ||||||||| ||||||||||| || || ||||| || || || || |||||||| |||
Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGCT 25234433
Query 14016 A 14016
|
Sbjct 25234432 A 25234432
>seq20
Length=39541208
Score = 96.9 bits (106), Expect = 3e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || |||||||| | ||||| || | || || ||||| |||||||| ||||| |||
Sbjct 37613883 GACATCACGCCCATCCTCTGATACTCGCCTACCCTCTTTTCGAAGAAGTTGGTTTTTCCT 37613942
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
|||||||| ||||| |||||||| ||||||||||||
Sbjct 37613943 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 37613978
Score = 96.9 bits (106), Expect = 3e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||||||||| || |||||||| | || |||||||| || ||||| |
Sbjct 37615172 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCT 37615231
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| || || | ||||| || || || ||||| ||||| || ||||| || || |
Sbjct 37615232 TGAGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGG 37615291
Query 14014 C 14014
|
Sbjct 37615292 C 37615292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479715766936000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |