Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 179 5e-40 >seq23 Length=36106517 Score = 179 bits (198), Expect = 5e-40 Identities = 435/655 (66%), Gaps = 4/655 (1%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| |||| ||||| ||| || || || || | || ||||| |||||| | Sbjct 32444921 CCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAAGAGCTGTTGTGGTTT 32444862 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015 || ||||| || ||||| || || ||| || ||||| | |||||| | | Sbjct 32444861 ATCAAGGGATCCACAAATGCTAATGAACTGTCTTCCAAAGGTGTGAAAATTTGGGATGCC 32444802 Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075 || || ||| | ||||||| || || ||| || ||||| |||| || ||| | Sbjct 32444801 AATGGTTCCCGAGACTTTTTGGACAGCCTGGGGTTCTCCAACAGAGAAGAAGGAGATTTA 32444742 Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACA 70135 || || || || || || |||||| | || | || | | || ||| || || Sbjct 32444741 GGCCCTGTTTATGGCTTTCAGTGGCGACATTTTGGGGCAGAATACAAAGATAAAGATTCA 32444682 Query 70136 GACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAAT 70195 || ||||| ||||| || || ||||| |||| | | | || ||||| |||| ||||| Sbjct 32444681 GATTATTCAGGTCAAGGAGTAGATCAGCTGCAAAAAGTGATCGACACAATCAAAACCAAC 32444622 Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 ||| || || || ||| | |||| | |||||||| |||| | | | ||||| Sbjct 32444621 CCAGATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTTCCTCTGATGGCC 32444562 Query 70256 CTACCACCGTGTCACTGT--TTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCT 70313 |||| || || || || || || ||||| || | |||| | | || ||| Sbjct 32444561 TTACCTCCATGCCA-TGCACTTTGC-CAGTTCTATGTGGTGAATGGTGAGCTCTCCTGCC 32444504 Query 70314 TAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATT 70373 | | |||||| | ||||||||||| ||||| ||||| || ||||| ||||| | Sbjct 32444503 AGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCAGCTACT 32444444 Query 70374 CTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACA 70433 | || | || ||||||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 32444443 CCCTGCTCACCTGCATGATTGCGCACATCACCGGCCTGAAGCCCGGCGATTTTGTACATA 32444384 Query 70434 CCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAAC 70493 | | || || || ||| | || | |||||||| ||||| |||| ||||| || | | Sbjct 32444383 CATTGGGAGATGCACACATTTACCTGAATCACATTGAGCCTCTAAAAGTGCAGCTTCAGC 32444324 Query 70494 GGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGA 70548 | || || || |||||||| ||||| | | ||| |||||||| | ||||| Sbjct 32444323 GAGAACCAAGGCCTTTTCCAAAGCTCAAAATCCTTCGAAAAGTTGAGACGATTGA 32444269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741040302990400