Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq9 120 7e-22
seq31 95.1 3e-14
seq20 87.8 4e-12
>seq9
Length=63840602
Score = 120 bits (132), Expect = 7e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| |||||| | || || ||||| ||||||||||| || ||||| || || || |||||
Sbjct 25234419 GGGGAAAGGGTGGTAGCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCT 25234478
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| |||||| ||||||||||||| || ||||| ||| | ||||| || || ||| |
Sbjct 25234479 GCTATATTTTGGCTGAAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCCAATGAACTC 25234538
Query 269246 ATAAGCAGGGACGAAG 269261
|| ||||| || ||||
Sbjct 25234539 ATCAGCAGAGATGAAG 25234554
>seq31
Length=25890693
Score = 95.1 bits (104), Expect = 3e-14
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431
|||||||| || |||||||| | ||||| || ||||| ||||||||||||||||| |||
Sbjct 2479961 TTCTGAATGTTGTAGTCAGACAAAGTTCGTCCATCTTCCAGTTGTTTTCCAGCAAAGATT 2479902
Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458
|| || || ||||||||||| || |||
Sbjct 2479901 AGTCTTTGCTGATCAGGAGGAATACCT 2479875
>seq20
Length=39541208
Score = 87.8 bits (96), Expect = 4e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
|| |||||||| ||| |||||||||||||| ||| | ||||| || | || ||||||
Sbjct 37613983 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAAACCAACTTCTTC 37613924
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611
|| ||| ||||| | | ||||||| ||||| || ||||| | | | ||| ||| |
Sbjct 37613923 GAAAAGAGGGTAGGCGAGTATCAGAGGATGGGCGTGATGTCAAGTTCAACAGAGAATTCT 37613864
Query 269612 TTCACTACAGATGCAGAATTCTAATAAC 269639
||||| ||||| || |||| || ||
Sbjct 37613863 TTCACCCTTGATGCTGACTTCTGATGAC 37613836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151368305324320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |