Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9 120 7e-22 seq31 95.1 3e-14 seq20 87.8 4e-12 >seq9 Length=63840602 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 25234419 GGGGAAAGGGTGGTAGCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCT 25234478 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| |||||| ||||||||||||| || ||||| ||| | ||||| || || ||| | Sbjct 25234479 GCTATATTTTGGCTGAAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCCAATGAACTC 25234538 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 25234539 ATCAGCAGAGATGAAG 25234554 >seq31 Length=25890693 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || |||||||| | ||||| || ||||| ||||||||||||||||| ||| Sbjct 2479961 TTCTGAATGTTGTAGTCAGACAAAGTTCGTCCATCTTCCAGTTGTTTTCCAGCAAAGATT 2479902 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || || ||||||||||| || ||| Sbjct 2479901 AGTCTTTGCTGATCAGGAGGAATACCT 2479875 >seq20 Length=39541208 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| || | || |||||| Sbjct 37613983 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAAACCAACTTCTTC 37613924 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 || ||| ||||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 37613923 GAAAAGAGGGTAGGCGAGTATCAGAGGATGGGCGTGATGTCAAGTTCAACAGAGAATTCT 37613864 Query 269612 TTCACTACAGATGCAGAATTCTAATAAC 269639 ||||| ||||| || |||| || || Sbjct 37613863 TTCACCCTTGATGCTGACTTCTGATGAC 37613836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151368305324320