Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq23 228 6e-55
seq16 86.0 4e-12
>seq23
Length=36106517
Score = 228 bits (252), Expect = 6e-55
Identities = 395/573 (69%), Gaps = 1/573 (0%)
Strand=Plus/Plus
Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448
||||| || || || || | || ||||| || || || || | ||||| ||||||
Sbjct 32444305 GGAAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAA 32444364
Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508
| ||| || ||||||| || || ||||| || || || | || ||||| | || ||
Sbjct 32444365 ATGTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCA 32444424
Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568
|||||| | ||||| || |||||||||| || || ||||| || || | ||||||||
Sbjct 32444425 ATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCT 32444484
Query 25569 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACAT 25628
|| |||||||||| ||||| || |||||||| | | ||| || ||||| || |
Sbjct 32444485 CCT-GACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGGCAAAG 32444543
Query 25629 GGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGAT 25688
| | ||| ||||| | || || || | ||||| || ||||| || |||| |||
Sbjct 32444544 TGCATGGCATGGAGGTAAGGCCATCAGAGGAAGATCTTTTGGATTCCAAGCACACAGGAT 32444603
Query 25689 GATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCAC 25748
||| | ||||| ||||||||| |||| || |||||||||||||| ||
Sbjct 32444604 GATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCTAC 32444663
Query 25749 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTG 25808
|| || || || |||| | || |||| ||||| || |||| | ||||||
Sbjct 32444664 TCCTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTG 32444723
Query 25809 GAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAA 25868
|| || || || || |||| ||||| ||||| |||| || ||| | |||||
Sbjct 32444724 AAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAA 32444783
Query 25869 AAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 25928
|||||||| |||||||||||| ||||| || || || || || || || || || |
Sbjct 32444784 AAAGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTAGC 32444843
Query 25929 GTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961
|||||||| || ||| ||||||| ||||||
Sbjct 32444844 ATTTGTGGATCCCTTGATAAACCACAACAGCTC 32444876
>seq16
Length=47638275
Score = 86.0 bits (94), Expect = 4e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840
|||| ||||| || |||| | |||||| || || || || || |||| ||||| ||||
Sbjct 10755855 TGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTT 10755914
Query 25841 CCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCT 25900
| |||| || ||| | ||||||||||||| |||||||||||| ||||| || |
Sbjct 10755915 CTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTT 10755974
Query 25901 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
| || || || || || || || | |||||||| ||
Sbjct 10755975 TCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCC 10756014
Score = 84.2 bits (92), Expect = 1e-11
Identities = 86/111 (77%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550
|| ||||| | || || |||||| | ||||| || |||||||||| || || |||||
Sbjct 10752372 AGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGC 10752431
Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 25601
|| || | |||||||| || ||||||||||| ||||| || ||||||||
Sbjct 10752432 ACACCCAGGCCCATGTCTCCT-GACCTCTGGTATAGCTGGCAGGAGAGCTC 10752481
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340129143328920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |