Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq23 228 6e-55 seq16 86.0 4e-12 >seq23 Length=36106517 Score = 228 bits (252), Expect = 6e-55 Identities = 395/573 (69%), Gaps = 1/573 (0%) Strand=Plus/Plus Query 25389 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAG 25448 ||||| || || || || | || ||||| || || || || | ||||| |||||| Sbjct 32444305 GGAAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAA 32444364 Query 25449 ACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCC 25508 | ||| || ||||||| || || ||||| || || || | || ||||| | || || Sbjct 32444365 ATGTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCA 32444424 Query 25509 ATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCC 25568 |||||| | ||||| || |||||||||| || || ||||| || || | |||||||| Sbjct 32444425 ATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCT 32444484 Query 25569 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACAT 25628 || |||||||||| ||||| || |||||||| | | ||| || ||||| || | Sbjct 32444485 CCT-GACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGGCAAAG 32444543 Query 25629 GGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGAT 25688 | | ||| ||||| | || || || | ||||| || ||||| || |||| ||| Sbjct 32444544 TGCATGGCATGGAGGTAAGGCCATCAGAGGAAGATCTTTTGGATTCCAAGCACACAGGAT 32444603 Query 25689 GATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCAC 25748 ||| | ||||| ||||||||| |||| || |||||||||||||| || Sbjct 32444604 GATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCTAC 32444663 Query 25749 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTG 25808 || || || || |||| | || |||| ||||| || |||| | |||||| Sbjct 32444664 TCCTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTG 32444723 Query 25809 GAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAA 25868 || || || || || |||| ||||| ||||| |||| || ||| | ||||| Sbjct 32444724 AAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAA 32444783 Query 25869 AAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 25928 |||||||| |||||||||||| ||||| || || || || || || || || || | Sbjct 32444784 AAAGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTAGC 32444843 Query 25929 GTTTGTGGACCCTCTGACGAACCACAGCAGCTC 25961 |||||||| || ||| ||||||| |||||| Sbjct 32444844 ATTTGTGGATCCCTTGATAAACCACAACAGCTC 32444876 >seq16 Length=47638275 Score = 86.0 bits (94), Expect = 4e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| ||||| || |||| | |||||| || || || || || |||| ||||| |||| Sbjct 10755855 TGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTT 10755914 Query 25841 CCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCT 25900 | |||| || ||| | ||||||||||||| |||||||||||| ||||| || | Sbjct 10755915 CTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTT 10755974 Query 25901 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 | || || || || || || || | |||||||| || Sbjct 10755975 TCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCC 10756014 Score = 84.2 bits (92), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| | || || |||||| | ||||| || |||||||||| || || ||||| Sbjct 10752372 AGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGC 10752431 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 25601 || || | |||||||| || ||||||||||| ||||| || |||||||| Sbjct 10752432 ACACCCAGGCCCATGTCTCCT-GACCTCTGGTATAGCTGGCAGGAGAGCTC 10752481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340129143328920