Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq18 120 3e-22
>seq18
Length=42608043
Score = 120 bits (132), Expect = 3e-22
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || |||||||| || ||||||||||||||| |||| || || |
Sbjct 42005975 AGGGTTACCTGGGTTGCCAAGCCCTGTCAGAGATGATCCAGTTTTACTTGGACGAGGTGA 42005916
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| |||||||| || || ||| | | ||| ||||| |||||||| ||||| ||||
Sbjct 42005915 TGCCGCAGGCTGAGAACCACAGCCCAGATGTCAAGGAGCATGTGAACTCCCTGGGTGAGA 42005856
Query 10260 ATCTAAAGACCCTAAGGCT 10278
| || || |||| |||||
Sbjct 42005855 AGCTGCAGTCCCTCAGGCT 42005837
Score = 100 bits (110), Expect = 3e-16
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| ||||||||||||||||||||||||||||| || |||||||| |
Sbjct 42003913 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAATTTGACATCTTCATTAACTACA 42003854
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
|||||| |||||||| | ||| ||
Sbjct 42003853 TAGAAGTTTACATGACAAAGAAGAT 42003829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547365241830400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |