Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq18 120 3e-22 >seq18 Length=42608043 Score = 120 bits (132), Expect = 3e-22 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || |||||||| || ||||||||||||||| |||| || || | Sbjct 42005975 AGGGTTACCTGGGTTGCCAAGCCCTGTCAGAGATGATCCAGTTTTACTTGGACGAGGTGA 42005916 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || ||| | | ||| ||||| |||||||| ||||| |||| Sbjct 42005915 TGCCGCAGGCTGAGAACCACAGCCCAGATGTCAAGGAGCATGTGAACTCCCTGGGTGAGA 42005856 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || || |||| ||||| Sbjct 42005855 AGCTGCAGTCCCTCAGGCT 42005837 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| ||||||||||||||||||||||||||||| || |||||||| | Sbjct 42003913 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAATTTGACATCTTCATTAACTACA 42003854 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 |||||| |||||||| | ||| || Sbjct 42003853 TAGAAGTTTACATGACAAAGAAGAT 42003829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547365241830400