Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq24 174 2e-38 seq6 111 2e-19 >seq24 Length=35080050 Score = 174 bits (192), Expect = 2e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || | || || || | ||||||||||||||| ||||||| ||||| |||||| Sbjct 28548656 GTCTGGAATAACTGCTCATCGCCCCATTCTGGATGTTCCTGTTTCAGCACATCACACACT 28548715 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| |||||||| || || |||||||| || |||||||||| |||||| Sbjct 28548716 CTGTTATGTTCCCGCAGCCAGATGGTGGCATACATCATCAGGCCAGGCACCATGCCAAAG 28548775 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | ||| || |||| || || ||||||||| Sbjct 28548776 ACCTCCTGCCCCACAGCAAAGCGCAGGTGTTCAGGGACTTGAGGTGGGTAGATCATGGAG 28548835 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| |||||||| | || ||||||| ||| || ||||| |||| Sbjct 28548836 ACCTGAGTGTCTTTGACTGTAGGAGGATACACTTCTCCATCAATTATCT 28548884 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 28549827 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 28549886 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||||||||| ||||| || || |||| || | |||||| | || |||||||| ||||| Sbjct 28549887 AAACTGGTGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCCTGTGGATC 28549946 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | |||||| || ||||||| | | | ||| || || || Sbjct 28549947 AGGGATGAACTTTCTTCTTAGAAGAAACTTGTCCACAATTTCTTTTGAATCAGGAAGCTT 28550006 Query 10208 ttttttACCTG 10218 ||| || |||| Sbjct 28550007 TTTCTTTCCTG 28550017 >seq6 Length=67462845 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || || ||| | || || || || ||||| || |||||||| |||| | Sbjct 8553925 TCTTGACAATGTTGAAGCCCGCCTCCCCACCAAATGTGCTTGGCTTCCAGTACTCCGGAG 8553984 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | || | || | Sbjct 8553985 AACAGATGGGATTCCCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 8554044 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || || |||| ||| ||| || ||| || | | | || | ||| ||||||| Sbjct 8554045 TCTCTCCAAAAATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGGTAGAACTCCA 8554104 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || ||||||||||| || || || | || || || || ||||| |||||| Sbjct 8554105 AGGCGTCGATGTCTCCATAGAGATCCTGCAACTCAGCTGCCATCTCCTTCTCTCCT 8554160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708506732617600