Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq24 174 2e-38
seq6 111 2e-19
>seq24
Length=35080050
Score = 174 bits (192), Expect = 2e-38
Identities = 176/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| || | || || || | ||||||||||||||| ||||||| ||||| ||||||
Sbjct 28548656 GTCTGGAATAACTGCTCATCGCCCCATTCTGGATGTTCCTGTTTCAGCACATCACACACT 28548715
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| ||||||| |||||||| || || |||||||| || |||||||||| ||||||
Sbjct 28548716 CTGTTATGTTCCCGCAGCCAGATGGTGGCATACATCATCAGGCCAGGCACCATGCCAAAG 28548775
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | |||| | ||| || |||| || || |||||||||
Sbjct 28548776 ACCTCCTGCCCCACAGCAAAGCGCAGGTGTTCAGGGACTTGAGGTGGGTAGATCATGGAG 28548835
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| |||||||| | || ||||||| ||| || ||||| ||||
Sbjct 28548836 ACCTGAGTGTCTTTGACTGTAGGAGGATACACTTCTCCATCAATTATCT 28548884
Score = 114 bits (126), Expect = 2e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 28549827 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 28549886
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||||||||| ||||| || || |||| || | |||||| | || |||||||| |||||
Sbjct 28549887 AAACTGGTGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCCTGTGGATC 28549946
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| |||| | || | |||||| || ||||||| | | | ||| || || ||
Sbjct 28549947 AGGGATGAACTTTCTTCTTAGAAGAAACTTGTCCACAATTTCTTTTGAATCAGGAAGCTT 28550006
Query 10208 ttttttACCTG 10218
||| || ||||
Sbjct 28550007 TTTCTTTCCTG 28550017
>seq6
Length=67462845
Score = 111 bits (122), Expect = 2e-19
Identities = 166/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
||||||| || || ||| | || || || || ||||| || |||||||| |||| |
Sbjct 8553925 TCTTGACAATGTTGAAGCCCGCCTCCCCACCAAATGTGCTTGGCTTCCAGTACTCCGGAG 8553984
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
| |||||| ||| | | ||| || ||||||||||| |||||||| | || | || |
Sbjct 8553985 AACAGATGGGATTCCCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 8554044
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || || |||| ||| ||| || ||| || | | | || | ||| |||||||
Sbjct 8554045 TCTCTCCAAAAATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGGTAGAACTCCA 8554104
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| ||||||||||| || || || | || || || || ||||| ||||||
Sbjct 8554105 AGGCGTCGATGTCTCCATAGAGATCCTGCAACTCAGCTGCCATCTCCTTCTCTCCT 8554160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708506732617600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |