Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq48 141 1e-29
seq63 129 9e-26
>seq48
Length=2645340
Score = 141 bits (156), Expect = 1e-29
Identities = 188/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2416181 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2416240
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || ||||||||| |||| || | |||| || ||||
Sbjct 2416241 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGAC 2416300
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| |||||
Sbjct 2416301 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2416360
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 2416361 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 2416420
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | | ||||| |||||
Sbjct 2416421 CCGCACGCTCTATGGCTTTGG 2416441
Score = 138 bits (152), Expect = 2e-28
Identities = 187/261 (72%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2420083 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2420024
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || ||||||||| |||| || | |||| || ||||
Sbjct 2420023 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGAC 2419964
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||| | ||| ||| |||| || || || ||| |||||
Sbjct 2419963 GCGCGGGGTGCTCAAGGTCTTCTTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2419904
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2419903 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2419844
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | | ||||| || ||
Sbjct 2419843 CCGCACGCTCTATGGCTTCGG 2419823
Score = 136 bits (150), Expect = 6e-28
Identities = 191/268 (71%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2578921 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2578862
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2578861 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2578802
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| |||||
Sbjct 2578801 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2578742
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2578741 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2578682
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | || |||||||| |||||
Sbjct 2578681 ACGCACCCTCTACGGTTTTGGCGGTTAA 2578654
Score = 132 bits (146), Expect = 8e-27
Identities = 186/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2393201 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2393260
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2393261 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2393320
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| |||||
Sbjct 2393321 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2393380
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| ||||| ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2393381 GCACGCCAAACGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2393440
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | | || || || ||
Sbjct 2393441 TCGCACGCTCTACGGCTTCGG 2393461
Score = 132 bits (146), Expect = 8e-27
Identities = 186/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2519994 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2519935
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2519934 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCAGGGCTCATCTACGAGGAGAC 2519875
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| |||||
Sbjct 2519874 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2519815
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2519814 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2519755
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | | || || || ||
Sbjct 2519754 CCGCACGCTCTACGGCTTCGG 2519734
Score = 129 bits (142), Expect = 9e-26
Identities = 185/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2438300 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2438241
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2438240 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2438181
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| |||||
Sbjct 2438180 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2438121
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2438120 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2438061
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | | || || || ||
Sbjct 2438060 ACGCACGCTCTACGGCTTCGG 2438040
Score = 129 bits (142), Expect = 9e-26
Identities = 185/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 2573847 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 2573906
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2573907 CCGCCGCCTGGCCCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 2573966
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| |||||
Sbjct 2573967 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 2574026
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 2574027 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2574086
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | | || || || ||
Sbjct 2574087 TCGCACGCTCTACGGCTTCGG 2574107
>seq63
Length=771133
Score = 129 bits (142), Expect = 9e-26
Identities = 185/261 (71%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 184231 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 184172
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 184171 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 184112
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| |||||
Sbjct 184111 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 184052
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 184051 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 183992
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | | || || || ||
Sbjct 183991 CCGCACGCTCTACGGCTTCGG 183971
Score = 123 bits (136), Expect = 4e-24
Identities = 184/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 177209 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 177268
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 177269 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 177328
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 177329 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 177388
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 177389 GCACGCCAAGCGCAAGACCGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 177448
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | | || || || ||
Sbjct 177449 CCGCACGCTCTACGGCTTCGG 177469
Score = 120 bits (132), Expect = 5e-23
Identities = 183/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || || ||||| || ||||||||||| || ||
Sbjct 210245 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCCGCCAT 210186
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 210185 CCGCCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 210126
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 210125 GCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 210066
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | || || || | || || || ||
Sbjct 210065 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGG 210006
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | | || || || ||
Sbjct 210005 CCGCACGCTCTACGGCTTCGG 209985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073334813720
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