Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 seq20 86.0 7e-12 >seq9 Length=63840602 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| || || || | |||||| ||||| || | || ||||| | ||||| || | Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | ||||||||| | ||||||| ||| || ||||||||||| || || |||||||| | Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435 Query 21618 CAAC 21621 | || Sbjct 25234434 CTAC 25234431 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||||| | | | Sbjct 25239345 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAAC 25239286 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || |||| ||| || || |||||||| || ||||| || || || || Sbjct 25239285 GCTGATACTCTGATACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 25239226 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 25239225 CCATAAAATCAAAGGGATTTTC 25239204 >seq20 Length=39541208 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 21131 AAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGA 21190 || |||||||| | | |||| ||| ||| | ||||||| | ||||| | ||| Sbjct 37613844 AAGTCAGCATCAAGGGTGAAAGAATTCTCTGTTGAACTTGACATCACGCCCATCCTCTGA 37613903 Query 21191 TAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATA 21250 || || | || || |||||||| || || || |||||||||| ||| ||| |||||| Sbjct 37613904 TACTCGCCTACCCTCTTTTCGAAGAAGTTGGTTTTTCCTTCCAGTGAAATATTCTCCATA 37613963 Query 21251 AAATCAAATGGATTTTC 21267 || |||||||||||||| Sbjct 37613964 AAGTCAAATGGATTTTC 37613980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531887236529600