Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 120 4e-22 seq15 116 5e-21 seq20 111 2e-19 >seq9 Length=63840602 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||||||||| | ||| ||||||||||| ||||| || |||||||| ||||||||||| Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGC 25234434 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || || | || |||| Sbjct 25231280 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 25231221 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || |||| | | || || ||||||| | | ||| || |||| Sbjct 25231220 AATACTTCTCATCTGATTTAAGCTTGTTCCAATGAGGAAGATCCTTTGATA 25231170 >seq15 Length=51729835 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 36813105 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 36813164 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 36813165 GATTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 36813224 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 36813225 CTGTTTCTTATACCATA 36813241 Score = 105 bits (116), Expect = 8e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||||||||| |||||||| ||||||||||| || | || || ||||||| | || Sbjct 36820821 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAAAAGGTCTCTGGCACGTTG 36820880 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 36820881 CTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGG 36820940 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 |||||||| || || | | ||||| || || Sbjct 36820941 CTCCAAGTAAATAGCAAATGCCCCAGGTCGCTT 36820973 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 || || | |||| | || | || || ||||| || | |||||||| || || |||||| Sbjct 36825299 CTTGAAAGTTGGGGGCGGTTCGTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAAC 36825358 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63710 || || |||||||| || ||||| ||||||||||| | || ||||| || |||||| Sbjct 36825359 CACTTCTCAGAAAGAAGGTTGTATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATT 36825418 Query 63711 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63749 || || | || | ||| ||||| || || ||||||||| Sbjct 36825419 CCCACAGATACCCTCATCAACATATGTTGTGGTCTTTCA 36825457 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 62576 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62635 ||| || || |||| || | || || || || ||||| || || || || || || || Sbjct 36815918 ATAGGTCTCATATGTACCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAAGGCTCCATA 36815977 Query 62636 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 62695 ||||||||| || ||||| | |||||| | || ||||| | || ||||| ||||| Sbjct 36815978 ATAAATGGTCTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGACTCTCAAAAGGATA 36816037 Query 62696 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62755 | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 36816038 CCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 36816097 Query 62756 CTTATTAGA 62764 ||||| || Sbjct 36816098 TTTATTTGA 36816106 >seq20 Length=39541208 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| | || || || | Sbjct 37615172 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCT 37615231 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || ||||| || || || ||||| |||||||||||||| ||||| || |||| Sbjct 37615232 TGAGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGG 37615291 Query 33446 C 33446 | Sbjct 37615292 C 37615292 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| || || || || | || || |||||||| ||||| |||||||| ||||| Sbjct 37616408 ATCTTTAATGTAGGTGTCAATGAGGAGGCTGTACATTTCGGAATGGATGTTTTCCATGGC 37616467 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 ||||| || ||||||||||| | || || |||||||| |||||| | ||| || || Sbjct 37616468 GATCTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGCACTTCTTGGCTAAAGCGCTC 37616527 Query 33684 CGCCAAAT 33691 | || ||| Sbjct 37616528 CACCTAAT 37616535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931314846400