Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23 143 7e-29 seq16 100 7e-16 seq15 89.7 1e-12 seq9 89.7 1e-12 >seq23 Length=36106517 Score = 143 bits (158), Expect = 7e-29 Identities = 404/614 (66%), Gaps = 10/614 (2%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || || ||||| || || | ||||| || || | ||||| || ||||| Sbjct 32444924 TTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAAGAGCTGTTGTGG 32444865 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| |||||||| |||||||| | | ||| ||| |||||||||||| Sbjct 32444864 TTTATCAAGGGATCCACAAATGCTAATGAACTGTCTTCCAAAGGTGTGAAAATTTGGGAT 32444805 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGT-CGACAACGAAGAAGGTG 111492 | ||||| || || |||||| | || ||| ||| || | | ||| |||||||| | Sbjct 32444804 GCCAATGGTTCCCGAGACTTTTTGGA--CAGCCTGGGGTTCTCCAACAGAGAAGAAGGAG 32444747 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC 111552 || | || || ||||| || ||||| ||||| || ||||| ||||| |||||| || Sbjct 32444746 ATTTAGGCCCTGTTTATGGCTTTCAGTGGCGACATTTTGGGGCAGAATACAAA--GAT-A 32444690 Query 111553 ACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 | || ||| || ||||| || ||| ||||| | || || || || || ||| | Sbjct 32444689 AAGATTCAGATTATTCAGGTCAAGGAGTAGATCAGCTGCAAAAAGTGATCGACACAATCA 32444630 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669 | | ||||||| | | | || || || |||| ||||| ||||| | | Sbjct 32444629 AAACCAACCCAGATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTTCCTC 32444570 Query 111670 AAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTT 111729 ||||| | || ||||| ||| | |||||||| ||||| | || ||| | Sbjct 32444569 TGATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGGTGAATGGTGAGCTCT 32444510 Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 | ||||| | | ||| | || | || || || || ||||| || || |||||||| | Sbjct 32444509 CCTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCA 32444450 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCA 111849 | ||| | || || || ||| | || || || | || || || || || || || Sbjct 32444449 GCTACTCCCTGCTCACCTGCATGATTGCGCACATCACCGGCCTGAAGCCCGGCGATTTTG 32444390 Query 111850 TTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGT 111909 | || | |||||||| || ||||| || |||||||| | || ||| ||| Sbjct 32444389 TACATACATTGGGAGATGCACACATTTACCTGAATCACATTGAGCCTCTAAAAGTGCAGC 32444330 Query 111910 TGAAGCGCAAACCA 111923 | |||| ||||| Sbjct 32444329 TTCAGCGAGAACCA 32444316 >seq16 Length=47638275 Score = 100 bits (110), Expect = 7e-16 Identities = 119/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 |||||||| |||||||| | | ||| ||| ||||||||||||| ||||| || || Sbjct 10756008 ACAAATGCTAATGAACTGTCTTCCAAAGGTGTGAAAATTTGGGATGCCAATGGTTCCCGA 10755949 Query 111450 GACTTTCTAGATTCAG-TTGGTCTTGT-CGACAACGAAGAAGGTGATCTCGGACCAGTTT 111507 |||||| | || ||| ||| || | | ||| |||||||| ||| | || || |||| Sbjct 10755948 GACTTTTTGGA--CAGCCTGGGGTTCTCCAACAGAGAAGAAGGAGATTTAGGCCCTGTTT 10755891 Query 111508 ACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 | || ||||| ||||| || ||||| ||||| |||||| Sbjct 10755890 ATGGCTTTCAGTGGCGACATTTTGGGGCAGAATACAAA 10755853 >seq15 Length=51729835 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||| ||||| || || |||| || ||||| ||||| || ||| Sbjct 36819677 GCTCAGCAGCTCTGGTATGCGATCATTGAGTCTCAGACAGAAACAGGCACACCATACATG 36819618 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || || |||||||||| |||| || ||||| | Sbjct 36819617 CTCTACAAAGATTCCTGTAATCGGAAAAGCAACCAGCAGAACCTGGGAACAATCAAATGC 36819558 Query 364231 AGCAACCTATGTACCGA 364247 |||||||| || || || Sbjct 36819557 AGCAACCTGTGCACGGA 36819541 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010 |||| ||| |||| | |||| || ||| |||||| |||| || || || |||||||| Sbjct 36811443 CAGAGCATACCAGAAATTCCTGATGATTTGAAGCAACTTTATAAGACTGTGTGGGAAATC 36811384 Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070 || | |||| | | | ||||| ||||| | |||||||| || ||||||||| Sbjct 36811383 TCTCAGAAAACTGTTCTCAAGATGGCAGCCGAGAGAGGTGCTTTCATTGACCAGAGCCAG 36811324 Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130 || || ||| | || || |||| | || | ||| ||||| |||||| |||||| Sbjct 36811323 TCTTTGAACATCCATATTGCTGAGCCTAACTATGGCAAACTTACTAGCATGCACTTCTAC 36811264 Query 365131 GGGTGGAA 365138 || ||||| Sbjct 36811263 GGTTGGAA 36811256 >seq9 Length=63840602 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || |||||||||||||| |||||| ||||| ||| || |||||||| Sbjct 25234434 GCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCTGCTATATTTTGGCTG 25234493 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 || ||| | | | ||||| || || || ||||| ||||| | || ||| ||||||| Sbjct 25234494 AAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGATGA 25234552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303319533595280