Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq23 143 7e-29
seq16 100 7e-16
seq15 89.7 1e-12
seq9 89.7 1e-12
>seq23
Length=36106517
Score = 143 bits (158), Expect = 7e-29
Identities = 404/614 (66%), Gaps = 10/614 (2%)
Strand=Plus/Minus
Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374
||||| || || ||||| || || | ||||| || || | ||||| || |||||
Sbjct 32444924 TTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAAGAGCTGTTGTGG 32444865
Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434
||||| ||| |||||||| |||||||| | | ||| ||| ||||||||||||
Sbjct 32444864 TTTATCAAGGGATCCACAAATGCTAATGAACTGTCTTCCAAAGGTGTGAAAATTTGGGAT 32444805
Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAG-TTGGTCTTGT-CGACAACGAAGAAGGTG 111492
| ||||| || || |||||| | || ||| ||| || | | ||| |||||||| |
Sbjct 32444804 GCCAATGGTTCCCGAGACTTTTTGGA--CAGCCTGGGGTTCTCCAACAGAGAAGAAGGAG 32444747
Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC 111552
|| | || || ||||| || ||||| ||||| || ||||| ||||| |||||| ||
Sbjct 32444746 ATTTAGGCCCTGTTTATGGCTTTCAGTGGCGACATTTTGGGGCAGAATACAAA--GAT-A 32444690
Query 111553 ACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609
| || ||| || ||||| || ||| ||||| | || || || || || ||| |
Sbjct 32444689 AAGATTCAGATTATTCAGGTCAAGGAGTAGATCAGCTGCAAAAAGTGATCGACACAATCA 32444630
Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669
| | ||||||| | | | || || || |||| ||||| ||||| | |
Sbjct 32444629 AAACCAACCCAGATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTTCCTC 32444570
Query 111670 AAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTT 111729
||||| | || ||||| ||| | |||||||| ||||| | || ||| |
Sbjct 32444569 TGATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGGTGAATGGTGAGCTCT 32444510
Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789
| ||||| | | ||| | || | || || || || ||||| || || |||||||| |
Sbjct 32444509 CCTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCA 32444450
Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCA 111849
| ||| | || || || ||| | || || || | || || || || || || ||
Sbjct 32444449 GCTACTCCCTGCTCACCTGCATGATTGCGCACATCACCGGCCTGAAGCCCGGCGATTTTG 32444390
Query 111850 TTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGT 111909
| || | |||||||| || ||||| || |||||||| | || ||| |||
Sbjct 32444389 TACATACATTGGGAGATGCACACATTTACCTGAATCACATTGAGCCTCTAAAAGTGCAGC 32444330
Query 111910 TGAAGCGCAAACCA 111923
| |||| |||||
Sbjct 32444329 TTCAGCGAGAACCA 32444316
>seq16
Length=47638275
Score = 100 bits (110), Expect = 7e-16
Identities = 119/158 (75%), Gaps = 4/158 (3%)
Strand=Plus/Minus
Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449
|||||||| |||||||| | | ||| ||| ||||||||||||| ||||| || ||
Sbjct 10756008 ACAAATGCTAATGAACTGTCTTCCAAAGGTGTGAAAATTTGGGATGCCAATGGTTCCCGA 10755949
Query 111450 GACTTTCTAGATTCAG-TTGGTCTTGT-CGACAACGAAGAAGGTGATCTCGGACCAGTTT 111507
|||||| | || ||| ||| || | | ||| |||||||| ||| | || || ||||
Sbjct 10755948 GACTTTTTGGA--CAGCCTGGGGTTCTCCAACAGAGAAGAAGGAGATTTAGGCCCTGTTT 10755891
Query 111508 ACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545
| || ||||| ||||| || ||||| ||||| ||||||
Sbjct 10755890 ATGGCTTTCAGTGGCGACATTTTGGGGCAGAATACAAA 10755853
>seq15
Length=51729835
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||| ||||| || || |||| || ||||| ||||| || |||
Sbjct 36819677 GCTCAGCAGCTCTGGTATGCGATCATTGAGTCTCAGACAGAAACAGGCACACCATACATG 36819618
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| || || || || |||||||||| |||| || ||||| |
Sbjct 36819617 CTCTACAAAGATTCCTGTAATCGGAAAAGCAACCAGCAGAACCTGGGAACAATCAAATGC 36819558
Query 364231 AGCAACCTATGTACCGA 364247
|||||||| || || ||
Sbjct 36819557 AGCAACCTGTGCACGGA 36819541
Score = 87.8 bits (96), Expect = 5e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT 365010
|||| ||| |||| | |||| || ||| |||||| |||| || || || ||||||||
Sbjct 36811443 CAGAGCATACCAGAAATTCCTGATGATTTGAAGCAACTTTATAAGACTGTGTGGGAAATC 36811384
Query 365011 TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAG 365070
|| | |||| | | | ||||| ||||| | |||||||| || |||||||||
Sbjct 36811383 TCTCAGAAAACTGTTCTCAAGATGGCAGCCGAGAGAGGTGCTTTCATTGACCAGAGCCAG 36811324
Query 365071 TCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTAC 365130
|| || ||| | || || |||| | || | ||| ||||| |||||| ||||||
Sbjct 36811323 TCTTTGAACATCCATATTGCTGAGCCTAACTATGGCAAACTTACTAGCATGCACTTCTAC 36811264
Query 365131 GGGTGGAA 365138
|| |||||
Sbjct 36811263 GGTTGGAA 36811256
>seq9
Length=63840602
Score = 89.7 bits (98), Expect = 1e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560
|| ||||||| || |||||||||||||| |||||| ||||| ||| || ||||||||
Sbjct 25234434 GCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCTGCTATATTTTGGCTG 25234493
Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619
|| ||| | | | ||||| || || || ||||| ||||| | || ||| |||||||
Sbjct 25234494 AAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGATGA 25234552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303319533595280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |