Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq15 116 5e-21
seq9 116 5e-21
seq20 114 2e-20
>seq15
Length=51729835
Score = 116 bits (128), Expect = 5e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 36813105 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 36813164
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
|| ||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 36813165 GATTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 36813224
Query 62312 CTATTTCTAAGACCGTA 62328
|| ||||| | ||| ||
Sbjct 36813225 CTGTTTCTTATACCATA 36813241
Score = 105 bits (116), Expect = 8e-18
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129
|||||||||||| |||||||| ||||||||||| || | || || ||||||| | ||
Sbjct 36820821 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAAAAGGTCTCTGGCACGTTG 36820880
Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||
Sbjct 36820881 CTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGG 36820940
Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222
|||||||| || || | | ||||| || ||
Sbjct 36820941 CTCCAAGTAAATAGCAAATGCCCCAGGTCGCTT 36820973
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505
|| || | |||| | || | || || ||||| || | |||||||| || || ||||||
Sbjct 36825299 CTTGAAAGTTGGGGGCGGTTCGTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAAC 36825358
Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565
|| || |||||||| || ||||| ||||||||||| | || ||||| || ||||||
Sbjct 36825359 CACTTCTCAGAAAGAAGGTTGTATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATT 36825418
Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604
|| || | || | ||| ||||| || || |||||||||
Sbjct 36825419 CCCACAGATACCCTCATCAACATATGTTGTGGTCTTTCA 36825457
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | ||| |||||||||||||| | || || || || || || || || || |
Sbjct 36828774 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 36828833
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
||||||| || ||||| | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 36828834 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTCGCAGCTGTTTCTGCAGCCAAAGTATCTA 36828893
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
||| || || || || ||| | |||| || ||||| || |||||
Sbjct 36828894 GTTCCACAGTGGTCACCCCACTGTATAAGCCCTGGATTACTTTCAT 36828939
Score = 89.7 bits (98), Expect = 7e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 62431 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62490
||| || || |||| || | || || || || ||||| || || || || || || ||
Sbjct 36815918 ATAGGTCTCATATGTACCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAAGGCTCCATA 36815977
Query 62491 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATA 62550
||||||||| || ||||| | |||||| | || ||||| | || ||||| |||||
Sbjct 36815978 ATAAATGGTCTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGACTCTCAAAAGGATA 36816037
Query 62551 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62610
| | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 36816038 CCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 36816097
Query 62611 CTTATTAGA 62619
||||| ||
Sbjct 36816098 TTTATTTGA 36816106
>seq9
Length=63840602
Score = 116 bits (128), Expect = 5e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744
|| ||||| || || | ||| |||||||| |||||||| ||||| || || | || ||
Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493
Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803
||||||||||| | |||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGC 25234434
>seq20
Length=39541208
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| ||||| | ||| |||||||| ||||| || ||||| | || || || |
Sbjct 37615172 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCT 37615231
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| || ||||||||||| || ||||| ||||| |||||||| |||||||| ||||
Sbjct 37615232 TGAGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGG 37615291
Query 32803 C 32803
|
Sbjct 37615292 C 37615292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633615842384000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |