Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 8e-14 seq20 87.8 3e-12 >seq9 Length=63840602 Score = 93.3 bits (102), Expect = 8e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| ||||||||||| | || || || ||||| |||||||| || | || || Sbjct 25234419 GGGGAAAGGGTGGTAGCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCT 25234478 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| | | |||| || ||||| |||||||| || || || ||||| Sbjct 25234479 GCTATATTTTGGCTGAAGAAAAGAGGTCTC-ATGCCTGGACTCACTTTTTCCAATGAACT 25234537 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 25234538 CATCAGCAGAGATGA 25234552 >seq20 Length=39541208 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || |||| ||||| | || || || || ||||||||||| || | || || Sbjct 37615307 GGAGAGCGGGTGGTGGCCTTCGCGGCAGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCG 37615248 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 ||||| |||||||||||| | | || |||||| || ||||| || || || ||||| Sbjct 37615247 TCCATTTTCTGGCTCAAGAAACGCGGGTTGATGCCTGGCCTCACATTTTCCAATGAACTT 37615188 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 37615187 ATTAGCAGAGATGAGG 37615172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315119350400