Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq9 93.3 8e-14
seq20 87.8 3e-12
>seq9
Length=63840602
Score = 93.3 bits (102), Expect = 8e-14
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| || ||| ||||||||||| | || || || ||||| |||||||| || | || ||
Sbjct 25234419 GGGGAAAGGGTGGTAGCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCT 25234478
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
| || || ||||| ||| | | |||| || ||||| |||||||| || || || |||||
Sbjct 25234479 GCTATATTTTGGCTGAAGAAAAGAGGTCTC-ATGCCTGGACTCACTTTTTCCAATGAACT 25234537
Query 42815 CATCAGCAGGGACGA 42829
||||||||| || ||
Sbjct 25234538 CATCAGCAGAGATGA 25234552
>seq20
Length=39541208
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||| || |||| ||||| | || || || || ||||||||||| || | || ||
Sbjct 37615307 GGAGAGCGGGTGGTGGCCTTCGCGGCAGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCG 37615248
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815
||||| |||||||||||| | | || |||||| || ||||| || || || |||||
Sbjct 37615247 TCCATTTTCTGGCTCAAGAAACGCGGGTTGATGCCTGGCCTCACATTTTCCAATGAACTT 37615188
Query 42816 ATCAGCAGGGACGAGG 42831
|| ||||| || ||||
Sbjct 37615187 ATTAGCAGAGATGAGG 37615172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944315119350400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |