Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq23 208 7e-49 seq16 89.7 5e-13 >seq23 Length=36106517 Score = 208 bits (230), Expect = 7e-49 Identities = 490/735 (67%), Gaps = 6/735 (1%) Strand=Plus/Plus Query 20159 AGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGA 20218 ||||||| ||| ||||| || || | ||| ||||| ||||||||||| || || Sbjct 32444329 AGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGT 32444388 Query 20219 ATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAG 20278 | ||| || ||||| | || || || | || |||| ||| | || | ||||| ||| Sbjct 32444389 ACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAG 32444448 Query 20279 CTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAG 20338 |||||||| || || || || |||| ||||||||||| |||||||| | ||||| ||| Sbjct 32444449 CTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAG 32444508 Query 20339 GAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 || |||||||| | | ||||| || || || | || || || || | |||||| Sbjct 32444509 GAGAGCTCACCATTCACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATC 32444568 Query 20399 AACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTT 20458 | | | || || ||||| ||||||| ||||||||||| || | || || || Sbjct 32444569 AGAGGAAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCATCTGGGTTGGTT 32444628 Query 20459 TTTATTAAATCCA-CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATC 20517 || ||| || | || | | | || || || | || || |||| ||| || | ||| Sbjct 32444629 TTGATTGTGTCGATCACTTTTTG-CAGCTGATCTACTCCTTGACCTGAATAATCTGAATC 32444687 Query 20518 CGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATC 20577 || ||| | |||||||| || | |||||| || || |||||||| || ||||| Sbjct 32444688 TTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATC 32444747 Query 20578 CCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTC 20637 || || ||||| | | || | | | ||| || || | ||| ||||| || Sbjct 32444748 TCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATC 32444807 Query 20638 CCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCA 20697 ||| || || || ||| | || || || | | | || ||||| | |||||| Sbjct 32444808 CCAAATTTTCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACCA 32444867 Query 20698 AAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTG 20757 | |||||||| || || ||| ||| || || || || || || || | ||||| | Sbjct 32444868 CAACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTC 32444927 Query 20758 GTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCG 20817 || | ||| || || | ||||||| ||| || | || |||||||| |||| ||||| Sbjct 32444928 ATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACACCGACAGGGTGCCGGTGCCCGTGCG 32444987 Query 20818 GTCGAGTCGATC--GCTGCCACGGCACAAAATTTCCCTCAACTGCCTGAGATACTGAAGT 20875 ||| || || | ||| | || || ||| | | | ||||| || ||||| | Sbjct 32444988 GTC--CTCCTTCCGGAAGCCGCAGCGCAGAATGTGCTCGATCTGCCCCAGGTACTGCAAC 32445045 Query 20876 TCCTCGTGGGGCGTC 20890 ||| ||||||||||| Sbjct 32445046 TCCCCGTGGGGCGTC 32445060 >seq16 Length=47638275 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| | || | ||||| ||||||||||| || || || || |||| ||| Sbjct 10752384 TGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 10752443 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||| |||||||| || ||||| ||||| |||||||| | | ||||| || || Sbjct 10752444 ATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGG 10752503 Query 20369 CA 20370 || Sbjct 10752504 CA 10752505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441361544993600