Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq23 208 7e-49
seq16 89.7 5e-13
>seq23
Length=36106517
Score = 208 bits (230), Expect = 7e-49
Identities = 490/735 (67%), Gaps = 6/735 (1%)
Strand=Plus/Plus
Query 20159 AGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGA 20218
||||||| ||| ||||| || || | ||| ||||| ||||||||||| || ||
Sbjct 32444329 AGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGT 32444388
Query 20219 ATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAG 20278
| ||| || ||||| | || || || | || |||| ||| | || | ||||| |||
Sbjct 32444389 ACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAG 32444448
Query 20279 CTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAG 20338
|||||||| || || || || |||| ||||||||||| |||||||| | ||||| |||
Sbjct 32444449 CTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAG 32444508
Query 20339 GAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATC 20398
|| |||||||| | | ||||| || || || | || || || || | ||||||
Sbjct 32444509 GAGAGCTCACCATTCACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATC 32444568
Query 20399 AACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTT 20458
| | | || || ||||| ||||||| ||||||||||| || | || || ||
Sbjct 32444569 AGAGGAAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCATCTGGGTTGGTT 32444628
Query 20459 TTTATTAAATCCA-CAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATC 20517
|| ||| || | || | | | || || || | || || |||| ||| || | |||
Sbjct 32444629 TTGATTGTGTCGATCACTTTTTG-CAGCTGATCTACTCCTTGACCTGAATAATCTGAATC 32444687
Query 20518 CGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATC 20577
|| ||| | |||||||| || | |||||| || || |||||||| || |||||
Sbjct 32444688 TTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATC 32444747
Query 20578 CCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTC 20637
|| || ||||| | | || | | | ||| || || | ||| ||||| ||
Sbjct 32444748 TCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATC 32444807
Query 20638 CCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCA 20697
||| || || || ||| | || || || | | | || ||||| | ||||||
Sbjct 32444808 CCAAATTTTCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACCA 32444867
Query 20698 AAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTG 20757
| |||||||| || || ||| ||| || || || || || || || | ||||| |
Sbjct 32444868 CAACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTC 32444927
Query 20758 GTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCG 20817
|| | ||| || || | ||||||| ||| || | || |||||||| |||| |||||
Sbjct 32444928 ATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACACCGACAGGGTGCCGGTGCCCGTGCG 32444987
Query 20818 GTCGAGTCGATC--GCTGCCACGGCACAAAATTTCCCTCAACTGCCTGAGATACTGAAGT 20875
||| || || | ||| | || || ||| | | | ||||| || ||||| |
Sbjct 32444988 GTC--CTCCTTCCGGAAGCCGCAGCGCAGAATGTGCTCGATCTGCCCCAGGTACTGCAAC 32445045
Query 20876 TCCTCGTGGGGCGTC 20890
||| |||||||||||
Sbjct 32445046 TCCCCGTGGGGCGTC 32445060
>seq16
Length=47638275
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308
|| |||| ||| | || | ||||| ||||||||||| || || || || |||| |||
Sbjct 10752384 TGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 10752443
Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368
|||||||| |||||||| || ||||| ||||| |||||||| | | ||||| || ||
Sbjct 10752444 ATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGG 10752503
Query 20369 CA 20370
||
Sbjct 10752504 CA 10752505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441361544993600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |