Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq18 109 6e-19 >seq18 Length=42608043 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||||||||||| |||||||| || ||| |||| || || | Sbjct 42005975 AGGGTTACCTGGGTTGCCAAGCCCTGTCAGAGATGATCCAGTTTTACTTGGACGAGGTGA 42005916 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| |||||||| ||||| ||| || | ||| || ||||| || || ||||||| | Sbjct 42005915 TGCCGCAGGCTGAGAACCACAGCCCAGATGTCAAGGAGCATGTGAACTCCCTGGGTGAGA 42005856 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008 | || || |||| |||| | ||||| Sbjct 42005855 AGCTGCAGTCCCTCAGGCTGAGACTGCG 42005828 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| | |||||||||||||||||||||||||| || |||||||||| Sbjct 42003913 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAATTTGACATCTTCATTAACTACA 42003854 Query 10140 TAGAAGCATACATGACAA 10157 |||||| |||||||||| Sbjct 42003853 TAGAAGTTTACATGACAA 42003836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552702705721600