Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq24 172 8e-38
seq6 113 7e-20
>seq24
Length=35080050
Score = 172 bits (190), Expect = 8e-38
Identities = 221/302 (73%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | ||| | || || ||||| |||||||| || || ||||||||||| ||||
Sbjct 28547046 AACACTGAATGAGGTAAAAGGACAGCCCTTCACGTTATGGCAGATGAGGGACTGGATGGA 28547105
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| | |||||||| ||||| || || || ||||| ||||||||| |
Sbjct 28547106 GGCAGTGTTGATGATCTTAAAACCTACTTCCCCACCAAAAGTACTGGGCTTCCAGTACTC 28547165
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
|| |||||||| || |||| || |||||||| || || || || || || || |
Sbjct 28547166 AGGAGAGCAGATAGGATTACCCATAAGTCCTTTCAAAGAGAATGGTGCTCCAAGTTCTAC 28547225
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGA 9113
|| | ||||| |||||||| | |||||||| ||||| || | |||| ||| || |
Sbjct 28547226 CATTGTTTCACCAAAGATGGCGTCTGGACGCGGCTTTTCTACCA-GAAGAGCAGGATACA 28547284
Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173
|||| | ||| |||| ||| ||||| ||||| ||||| ||||| || |||||||| |
Sbjct 28547285 GTTCCATAGCGTCGATGTCACCATAAGCTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 28547344
Query 9174 CT 9175
||
Sbjct 28547345 CT 28547346
Score = 161 bits (178), Expect = 1e-34
Identities = 170/224 (76%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || || |||||||| || |||||||| || ||||| ||||| || ||||| || ||
Sbjct 28548656 GTCTGGAATAACTGCTCATCGCCCCATTCTGGATGTTCCTGTTTCAGCACATCACACACT 28548715
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||| ||||| | |||||| |||||||| |||||||| | || ||||| | |||||
Sbjct 28548716 CTGTTATGTTCCCGCAGCCAGATGGTGGCATACATCATCAGGCCAGGCACCATGCCAAAG 28548775
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | |||||| ||||||||||| | || || |||| || | || | |||
Sbjct 28548776 ACCTCCTGCCCCACAGCAAAGCGCAGGTGTTCAGGGACTTGAGGTGGGTAGATCATGGAG 28548835
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962
||||| || |||||||| || || ||||||| ||| || |||||
Sbjct 28548836 ACCTGAGTGTCTTTGACTGTAGGAGGATACACTTCTCCATCAAT 28548879
Score = 118 bits (130), Expect = 2e-21
Identities = 133/178 (75%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 10120 CTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAA 10179
||||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | |
Sbjct 28549826 CTCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGA 28549885
Query 10180 AAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGAT 10239
|||| ||||| || ||||| || | || || | ||||||| || |||||||| ||||
Sbjct 28549886 AAAACTGGTGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCCTGTGGAT 28549945
Query 10240 CGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
| ||||| || | || | | || || ||||||||||| | | ||||||| || ||
Sbjct 28549946 CAGGGATGAACTTTCTTCTTAGAAGAAACTTGTCCACAATTTCTTTTGAATCAGGAAG 28550003
Score = 105 bits (116), Expect = 1e-17
Identities = 196/286 (69%), Gaps = 4/286 (1%)
Strand=Plus/Plus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || || |||| |||||||| || |||| | || || | | | |||
Sbjct 28548067 CCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGACCATGTTCTAGTAAGATA 28548126
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || |||| || |||| || || |||| | |||
Sbjct 28548127 GAGTTGTTGTACAGAAACTGTTGATAGTTGTACTCTTTTTCATTAATTTGAAAGGCGTCA 28548186
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|| | |||| ||||||| |||||||||| |||||||| || || || ||||| ||||||
Sbjct 28548187 GGAAGAAGAGGATGCCAGTGGTAGAGGGTGTTGAACTCAGCAGCAATGCGGTTTTGGTAC 28548246
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | || || ||||| | |||| ||||| || || |
Sbjct 28548247 TGGAATTGTTGGTT--GAAAAGCAGTTCTGGATCAAATTTGAGCTTGAAGTTATAGCCAC 28548304
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | ||||||||||| | | |||| ||| ||||| ||||| ||
Sbjct 28548305 TCAAGTGCTGGACATAGTCTTCAATTACAATCTTAATAGTTTCACC 28548350
Score = 86.0 bits (94), Expect = 9e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||| || || || | ||||| || |||||| ||| || ||||| || | ||| |||
Sbjct 28551063 TCACCCTTTACGCCCATGGGAGTCGGACAGTCATCAGGTACAGGAGGAAGGGCTCTGGTA 28551122
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || ||||| || ||||| || ||||||||||| | | ||| ||
Sbjct 28551123 TAATAGGAGAGGTTAGAAAAGGCCTCCCAACTTTTGTAGCCATAGTGCATGTTATAAGTT 28551182
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| || || |||| || | || ||||||
Sbjct 28551183 GGTGGGCTCTCAACCAAGTGTGATCTGGCT 28551212
>seq6
Length=67462845
Score = 113 bits (124), Expect = 7e-20
Identities = 176/249 (71%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 8932 GGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTA 8991
||| || || || || |||| || || | ||||| || || ||||| || ||||||||
Sbjct 8553917 GGTGGCCGTCTTGACAATGTTGAAGCCCGCCTCCCCACCAAATGTGCTTGGCTTCCAGTA 8553976
Query 8992 CGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTC 9051
| |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||
Sbjct 8553977 CTCCGGAGAACAGATGGGATTCCCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATTTC 8554036
Query 9052 GATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGT 9110
|| || ||||| || || |||| ||| | || || | || | |||| | ||
Sbjct 8554037 TATCATACTCTCTCCAAAAATGGAGTTTGGATGGCACTTCTCAA-GAAGCAGCCCCGGGT 8554095
Query 9111 AGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCT 9170
||| || | || |||| ||| |||||||| | | |||||| || || ||||||||||
Sbjct 8554096 AGAACTCCAAGGCGTCGATGTCTCCATAGAGATCCTGCAACTCAGCTGCCATCTCCTTCT 8554155
Query 9171 CACCTACAA 9179
| |||||||
Sbjct 8554156 CTCCTACAA 8554164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723709544936000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |