Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq24 172 8e-38 seq6 113 7e-20 >seq24 Length=35080050 Score = 172 bits (190), Expect = 8e-38 Identities = 221/302 (73%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | || || ||||| |||||||| || || ||||||||||| |||| Sbjct 28547046 AACACTGAATGAGGTAAAAGGACAGCCCTTCACGTTATGGCAGATGAGGGACTGGATGGA 28547105 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| ||||| || || || ||||| ||||||||| | Sbjct 28547106 GGCAGTGTTGATGATCTTAAAACCTACTTCCCCACCAAAAGTACTGGGCTTCCAGTACTC 28547165 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || |||||||| || |||| || |||||||| || || || || || || || | Sbjct 28547166 AGGAGAGCAGATAGGATTACCCATAAGTCCTTTCAAAGAGAATGGTGCTCCAAGTTCTAC 28547225 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGA 9113 || | ||||| |||||||| | |||||||| ||||| || | |||| ||| || | Sbjct 28547226 CATTGTTTCACCAAAGATGGCGTCTGGACGCGGCTTTTCTACCA-GAAGAGCAGGATACA 28547284 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 |||| | ||| |||| ||| ||||| ||||| ||||| ||||| || |||||||| | Sbjct 28547285 GTTCCATAGCGTCGATGTCACCATAAGCTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 28547344 Query 9174 CT 9175 || Sbjct 28547345 CT 28547346 Score = 161 bits (178), Expect = 1e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || |||||||| || |||||||| || ||||| ||||| || ||||| || || Sbjct 28548656 GTCTGGAATAACTGCTCATCGCCCCATTCTGGATGTTCCTGTTTCAGCACATCACACACT 28548715 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| ||||| | |||||| |||||||| |||||||| | || ||||| | ||||| Sbjct 28548716 CTGTTATGTTCCCGCAGCCAGATGGTGGCATACATCATCAGGCCAGGCACCATGCCAAAG 28548775 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||||||||| | || || |||| || | || | ||| Sbjct 28548776 ACCTCCTGCCCCACAGCAAAGCGCAGGTGTTCAGGGACTTGAGGTGGGTAGATCATGGAG 28548835 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 ||||| || |||||||| || || ||||||| ||| || ||||| Sbjct 28548836 ACCTGAGTGTCTTTGACTGTAGGAGGATACACTTCTCCATCAAT 28548879 Score = 118 bits (130), Expect = 2e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 10120 CTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAA 10179 ||||||||||||| |||| |||| | |||||||| ||||||||| ||| ||| | | Sbjct 28549826 CTCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGA 28549885 Query 10180 AAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGAT 10239 |||| ||||| || ||||| || | || || | ||||||| || |||||||| |||| Sbjct 28549886 AAAACTGGTGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCCTGTGGAT 28549945 Query 10240 CGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 | ||||| || | || | | || || ||||||||||| | | ||||||| || || Sbjct 28549946 CAGGGATGAACTTTCTTCTTAGAAGAAACTTGTCCACAATTTCTTTTGAATCAGGAAG 28550003 Score = 105 bits (116), Expect = 1e-17 Identities = 196/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| |||||||| || |||| | || || | | | ||| Sbjct 28548067 CCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTAAGACCATGTTCTAGTAAGATA 28548126 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| || |||| || || |||| | ||| Sbjct 28548127 GAGTTGTTGTACAGAAACTGTTGATAGTTGTACTCTTTTTCATTAATTTGAAAGGCGTCA 28548186 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 || | |||| ||||||| |||||||||| |||||||| || || || ||||| |||||| Sbjct 28548187 GGAAGAAGAGGATGCCAGTGGTAGAGGGTGTTGAACTCAGCAGCAATGCGGTTTTGGTAC 28548246 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | || || ||||| | |||| ||||| || || | Sbjct 28548247 TGGAATTGTTGGTT--GAAAAGCAGTTCTGGATCAAATTTGAGCTTGAAGTTATAGCCAC 28548304 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | ||||||||||| | | |||| ||| ||||| ||||| || Sbjct 28548305 TCAAGTGCTGGACATAGTCTTCAATTACAATCTTAATAGTTTCACC 28548350 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||| || || || | ||||| || |||||| ||| || ||||| || | ||| ||| Sbjct 28551063 TCACCCTTTACGCCCATGGGAGTCGGACAGTCATCAGGTACAGGAGGAAGGGCTCTGGTA 28551122 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||| || ||||| || ||||||||||| | | ||| || Sbjct 28551123 TAATAGGAGAGGTTAGAAAAGGCCTCCCAACTTTTGTAGCCATAGTGCATGTTATAAGTT 28551182 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || || |||| || | || |||||| Sbjct 28551183 GGTGGGCTCTCAACCAAGTGTGATCTGGCT 28551212 >seq6 Length=67462845 Score = 113 bits (124), Expect = 7e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8932 GGTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTA 8991 ||| || || || || |||| || || | ||||| || || ||||| || |||||||| Sbjct 8553917 GGTGGCCGTCTTGACAATGTTGAAGCCCGCCTCCCCACCAAATGTGCTTGGCTTCCAGTA 8553976 Query 8992 CGCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTC 9051 | |||| || |||||| ||| | | ||| || || | |||||| |||||||| | || Sbjct 8553977 CTCCGGAGAACAGATGGGATTCCCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATTTC 8554036 Query 9052 GATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGT 9110 || || ||||| || || |||| ||| | || || | || | |||| | || Sbjct 8554037 TATCATACTCTCTCCAAAAATGGAGTTTGGATGGCACTTCTCAA-GAAGCAGCCCCGGGT 8554095 Query 9111 AGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCT 9170 ||| || | || |||| ||| |||||||| | | |||||| || || |||||||||| Sbjct 8554096 AGAACTCCAAGGCGTCGATGTCTCCATAGAGATCCTGCAACTCAGCTGCCATCTCCTTCT 8554155 Query 9171 CACCTACAA 9179 | ||||||| Sbjct 8554156 CTCCTACAA 8554164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723709544936000