Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq55 140 1e-27
seq21 93.3 2e-13
seq6 87.8 7e-12
>seq55
Length=1670966
Score = 140 bits (154), Expect = 1e-27
Identities = 225/323 (70%), Gaps = 3/323 (1%)
Strand=Plus/Minus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
||||||||||| || |||||||| |||||||| ||||| || ||||| || | | |
Sbjct 1141600 CCTGAAGAAATCTCTTCTATGGTGCTTACTAAGATGAAGGAGACAGCTGAGGCTTTTTTG 1141541
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
|| ||| || || |||| ||||| ||||| || || ||||| ||||| | || ||
Sbjct 1141540 GGCCATCCTGTCACCAATGCTGTAATCACTGTGCCAGCCTATTTTAATGACTCTCAGCGC 1141481
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
||||| || |||||||| || || || ||| | ||||| || ||||||| ||||||
Sbjct 1141480 CAAGCCACCAAAGATGCTGGTGTGATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAA 1141421
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483
|| ||||| ||||| | || ||||| ||| ||| | || | ||| | ||
Sbjct 1141420 CCCACAGCGGCTGCCATCGCCTATGGTTTAGATAAAGC---AGGTCAGGGAGAGCGACAT 1141364
Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543
| ||| | |||||| | |||||||| || ||| || | || | || || |||
Sbjct 1141363 GTCTTAATCTTTGATCTGGGTGGAGGCACATTCGATGTATCCATTCTGACCATAGATGAT 1141304
Query 451544 GGGGTATTTGAAGTAAAGGCAAC 451566
|| | ||||| |||||||| ||
Sbjct 1141303 GGCATTTTTGAGGTAAAGGCCAC 1141281
>seq21
Length=39324707
Score = 93.3 bits (102), Expect = 2e-13
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
|| || ||||| ||||| || || || |||| ||||||| ||||| | |||||||||
Sbjct 28544870 CAGGCTACTAAGGATGCTGGCCAAATCTCTGGACTAAATGTGCTTCGTGTAATTAATGAA 28544811
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467
|| ||||| |||||||| |||||||| |||| |||||| ||||
Sbjct 28544810 CCCACAGCTGCTGCTCTGGCATATGGTCTAGACAAATCAGAAGA 28544767
>seq6
Length=67462845
Score = 87.8 bits (96), Expect = 7e-12
Identities = 128/178 (72%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 451426 TACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTAT 451485
||||||||||||| | || ||||| || | || || ||| | || ||||| |||||
Sbjct 6496146 TACAGCAGCTGCTATTGCTTATGGCCTTG----AT-AAGAGAGA-AGGGGAAAAGAATAT 6496199
Query 451486 TTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG 451545
| | || ||||| ||||||| ||||| ||| ||| | || | || || ||||
Sbjct 6496200 TCTGGTGTTTGACCTTGGTGGTGGAACCTTCGATGTATCTCTTCTCACCATCGACAATGG 6496259
Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603
|| |||||||| ||| || ||||| ||||||||||| || || ||||| |||||
Sbjct 6496260 TGTCTTTGAAGTCGTGGCTACTAATGGAGATACTCATCTGGGTGGAGAAGACTTTGAT 6496317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975666759660320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |