Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq55 140 1e-27 seq21 93.3 2e-13 seq6 87.8 7e-12 >seq55 Length=1670966 Score = 140 bits (154), Expect = 1e-27 Identities = 225/323 (70%), Gaps = 3/323 (1%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||||||||| || |||||||| |||||||| ||||| || ||||| || | | | Sbjct 1141600 CCTGAAGAAATCTCTTCTATGGTGCTTACTAAGATGAAGGAGACAGCTGAGGCTTTTTTG 1141541 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || ||| || || |||| ||||| ||||| || || ||||| ||||| | || || Sbjct 1141540 GGCCATCCTGTCACCAATGCTGTAATCACTGTGCCAGCCTATTTTAATGACTCTCAGCGC 1141481 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| || |||||||| || || || ||| | ||||| || ||||||| |||||| Sbjct 1141480 CAAGCCACCAAAGATGCTGGTGTGATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAA 1141421 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 || ||||| ||||| | || ||||| ||| ||| | || | ||| | || Sbjct 1141420 CCCACAGCGGCTGCCATCGCCTATGGTTTAGATAAAGC---AGGTCAGGGAGAGCGACAT 1141364 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543 | ||| | |||||| | |||||||| || ||| || | || | || || ||| Sbjct 1141363 GTCTTAATCTTTGATCTGGGTGGAGGCACATTCGATGTATCCATTCTGACCATAGATGAT 1141304 Query 451544 GGGGTATTTGAAGTAAAGGCAAC 451566 || | ||||| |||||||| || Sbjct 1141303 GGCATTTTTGAGGTAAAGGCCAC 1141281 >seq21 Length=39324707 Score = 93.3 bits (102), Expect = 2e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||| Sbjct 28544870 CAGGCTACTAAGGATGCTGGCCAAATCTCTGGACTAAATGTGCTTCGTGTAATTAATGAA 28544811 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 || ||||| |||||||| |||||||| |||| |||||| |||| Sbjct 28544810 CCCACAGCTGCTGCTCTGGCATATGGTCTAGACAAATCAGAAGA 28544767 >seq6 Length=67462845 Score = 87.8 bits (96), Expect = 7e-12 Identities = 128/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 451426 TACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTAT 451485 ||||||||||||| | || ||||| || | || || ||| | || ||||| ||||| Sbjct 6496146 TACAGCAGCTGCTATTGCTTATGGCCTTG----AT-AAGAGAGA-AGGGGAAAAGAATAT 6496199 Query 451486 TTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGG 451545 | | || ||||| ||||||| ||||| ||| ||| | || | || || |||| Sbjct 6496200 TCTGGTGTTTGACCTTGGTGGTGGAACCTTCGATGTATCTCTTCTCACCATCGACAATGG 6496259 Query 451546 GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || |||||||| ||| || ||||| ||||||||||| || || ||||| ||||| Sbjct 6496260 TGTCTTTGAAGTCGTGGCTACTAATGGAGATACTCATCTGGGTGGAGAAGACTTTGAT 6496317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975666759660320