Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq25 116 3e-20
seq6 102 6e-16
seq17 87.8 1e-11
>seq25
Length=34219090
Score = 116 bits (128), Expect = 3e-20
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
||||| || | |||||||| | ||||||||||||||| |||||||| ||||| | |||
Sbjct 16172681 TTTTTGTCTAAGCCATACGCGATAGCAGCAGCAGTTGGCTCATTAATGATTCTTAGTACA 16172622
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| ||||||||||| | || |||||||| ||||| || | || || || ||||||||
Sbjct 16172621 TTGAGACCAGCAATGGTCCCAGCATCTTTGGTGGCCTGACGCTGAGAGTCATTAAAATAA 16172562
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
||||| || || | || ||||
Sbjct 16172561 GCAGGTACTGTGACCACTGCAT 16172540
Score = 104 bits (114), Expect = 2e-16
Identities = 223/328 (68%), Gaps = 4/328 (1%)
Strand=Plus/Minus
Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669
|||||||| |||||||||||||||||||| | | | ||| | || || ||||||||
Sbjct 16173323 GCACCATAAGCAACAGCTTCATCAGGATTGATGCTCTTATTCAATTCCTTTCCATTGAAG 16173264
Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728
|||| || |||| ||| | || || ||||| | || || || || | |||||
Sbjct 16173263 AAATCCTGTAGGAGTT-TCTGAATTTTGGGGATACGGGTAGAGCCGCCCACCAGGACAAT 16173205
Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAA 517787
||||| | ||| || || || || || | ||| | | |||| ||||| |||| |||
Sbjct 16173204 ATCATGGATCTGGGACTTGTCTAGCTTGGCATCACGAAGAGCTTTCTCAACTGGGTCCAA 16173145
Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847
| | | | ||||||||| | | | |||||| ||| ||| | |||| | | ||
Sbjct 16173144 GGTAC-CACGAAACAAGTCAGCATTCAATTCTTCAAATCGAGCACGGGTAATGGAGGTAT 16173086
Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907
| || |||||||| | | ||||||| |||||| | | || || ||||| |
Sbjct 16173085 AGAAGTCGATTCCTTCATAGAGTGAATCAATTTCAATACTGGCCTGGGTGCTGGAAGAGA 16173026
Query 517908 GTGCACGTTTAGCACGTTCACATGCTGT 517935
| | ||| |||||||| ||||| || ||
Sbjct 16173025 GCGTACGCTTAGCACGCTCACAAGCAGT 16172998
>seq6
Length=67462845
Score = 102 bits (112), Expect = 6e-16
Identities = 210/307 (68%), Gaps = 18/307 (6%)
Strand=Plus/Minus
Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155
|||||||||||||| ||| |||| || ||| || ||| || ||| | ||| ||||
Sbjct 6498385 TTTCTAATTCATTTCTAGTGTCAAT-GC-GCTCCTTAAGCTTTTTGTCTTCCTCTGCAAA 6498328
Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCTTCCGCGAT 517211
| | ||| || ||| ||| || ||||||| || |||| || || | |
Sbjct 6498327 CTTCTCAGCATCATTAACCATCCTTTCAATTTCCTCAGGTGTCAGGCGATTTT----GGT 6498272
Query 517212 TATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 517268
||| ||||| || || || || |||||| ||| ||| || | || |||||
Sbjct 6498271 CATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCACTC 6498215
Query 517269 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 517328
||||||||||| |||| | ||||| ||||||||||| || |||||||| | |||
Sbjct 6498214 GCAGAATACCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGGAG 6498155
Query 517329 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 517388
|||| || || || || || ||| ||||||||| || ||| ||||| || | ||
Sbjct 6498154 CAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGATGATTGTCTTTTGTCAGGGGTC 6498095
Query 517389 GTTCACC 517395
|||||||
Sbjct 6498094 GTTCACC 6498088
>seq17
Length=44067645
Score = 87.8 bits (96), Expect = 1e-11
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| || || |||| || ||||| ||||||||||| || ||| | || |||||| |
Sbjct 4400375 TGTACACTTATCCTGACTGAAGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGTCTTGGT 4400434
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560
|| |||| ||||| | || || ||||| || |||||||||||| | | |||||| |
Sbjct 4400435 GTGGTTGGGAGAGACAAATACGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 4400494
Query 635561 GATGCT 635566
|| |||
Sbjct 4400495 GAAGCT 4400500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780721168480240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |