Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq25 116 3e-20 seq6 102 6e-16 seq17 87.8 1e-11 >seq25 Length=34219090 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | |||||||| | ||||||||||||||| |||||||| ||||| | ||| Sbjct 16172681 TTTTTGTCTAAGCCATACGCGATAGCAGCAGCAGTTGGCTCATTAATGATTCTTAGTACA 16172622 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| | || |||||||| ||||| || | || || || |||||||| Sbjct 16172621 TTGAGACCAGCAATGGTCCCAGCATCTTTGGTGGCCTGACGCTGAGAGTCATTAAAATAA 16172562 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || || | || |||| Sbjct 16172561 GCAGGTACTGTGACCACTGCAT 16172540 Score = 104 bits (114), Expect = 2e-16 Identities = 223/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||||||||||||||| | | | ||| | || || |||||||| Sbjct 16173323 GCACCATAAGCAACAGCTTCATCAGGATTGATGCTCTTATTCAATTCCTTTCCATTGAAG 16173264 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 |||| || |||| ||| | || || ||||| | || || || || | ||||| Sbjct 16173263 AAATCCTGTAGGAGTT-TCTGAATTTTGGGGATACGGGTAGAGCCGCCCACCAGGACAAT 16173205 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAA 517787 ||||| | ||| || || || || || | ||| | | |||| ||||| |||| ||| Sbjct 16173204 ATCATGGATCTGGGACTTGTCTAGCTTGGCATCACGAAGAGCTTTCTCAACTGGGTCCAA 16173145 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | | | | ||||||||| | | | |||||| ||| ||| | |||| | | || Sbjct 16173144 GGTAC-CACGAAACAAGTCAGCATTCAATTCTTCAAATCGAGCACGGGTAATGGAGGTAT 16173086 Query 517848 TATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATA 517907 | || |||||||| | | ||||||| |||||| | | || || ||||| | Sbjct 16173085 AGAAGTCGATTCCTTCATAGAGTGAATCAATTTCAATACTGGCCTGGGTGCTGGAAGAGA 16173026 Query 517908 GTGCACGTTTAGCACGTTCACATGCTGT 517935 | | ||| |||||||| ||||| || || Sbjct 16173025 GCGTACGCTTAGCACGCTCACAAGCAGT 16172998 >seq6 Length=67462845 Score = 102 bits (112), Expect = 6e-16 Identities = 210/307 (68%), Gaps = 18/307 (6%) Strand=Plus/Minus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155 |||||||||||||| ||| |||| || ||| || ||| || ||| | ||| |||| Sbjct 6498385 TTTCTAATTCATTTCTAGTGTCAAT-GC-GCTCCTTAAGCTTTTTGTCTTCCTCTGCAAA 6498328 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCTTCCGCGAT 517211 | | ||| || ||| ||| || ||||||| || |||| || || | | Sbjct 6498327 CTTCTCAGCATCATTAACCATCCTTTCAATTTCCTCAGGTGTCAGGCGATTTT----GGT 6498272 Query 517212 TATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 517268 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 6498271 CATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCACTC 6498215 Query 517269 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 517328 ||||||||||| |||| | ||||| ||||||||||| || |||||||| | ||| Sbjct 6498214 GCAGAATACCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGGAG 6498155 Query 517329 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 517388 |||| || || || || || ||| ||||||||| || ||| ||||| || | || Sbjct 6498154 CAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGATGATTGTCTTTTGTCAGGGGTC 6498095 Query 517389 GTTCACC 517395 ||||||| Sbjct 6498094 GTTCACC 6498088 >seq17 Length=44067645 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500 ||||| || || |||| || ||||| ||||||||||| || ||| | || |||||| | Sbjct 4400375 TGTACACTTATCCTGACTGAAGGAGACTCAGCTAAAACTTTGGCTGTTTCAGGTCTTGGT 4400434 Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560 || |||| ||||| | || || ||||| || |||||||||||| | | |||||| | Sbjct 4400435 GTGGTTGGGAGAGACAAATACGGGGTTTTTCCTCTTAGAGGAAAAATACTCAATGTTCGA 4400494 Query 635561 GATGCT 635566 || ||| Sbjct 4400495 GAAGCT 4400500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780721168480240