Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq171 98.7 8e-16 seq61 91.5 1e-13 seq55 91.5 1e-13 seq201 89.7 4e-13 seq131 87.8 1e-12 seq195 86.0 5e-12 seq67 82.4 6e-11 >seq171 Length=12832 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 5395 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 5454 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || | || ||||| ||||||||| |||| |||| Sbjct 5455 CCCACTTCTGGAAGGTTCCATTGCCCCCAGGCCTGGTGTCCACCTGCTCCACGTTCTCAG 5514 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| ||||| || | ||| ||| ||||||| |||||||| Sbjct 5515 TCAGGTTCTC----CCCATCTCGCTGCCAGGTCAGGGTGATGCCCGCAGGGTAGAAGCCC 5570 Query 525 GTGGCCCAACATTTTAGTGTTAC 547 |||||| ||||| || || || Sbjct 5571 AAGGCCCAGCATTTCAGGGTGAC 5593 >seq61 Length=822949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | |||||| | | |||| Sbjct 694692 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGTACCACCACAGCTG 694751 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||| || || | || ||||| |||||| || || | | | Sbjct 694752 CCCACTTCTGGAAGGTTCCGTCCCCCCCAGGCCTGGTGTCCACCAGCTCCGTGTCCTGGG 694811 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| ||||| || | ||| ||||||||||| |||||||| Sbjct 694812 TCAGGTCCTC----CCCATCTCGCTGCCAGGTCAGGGTGATGTCCGCAGGGTAGAAGCCC 694867 Query 525 GTGGCCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||||| || || || || || | | |||||| Sbjct 694868 AGGGCCCAGCACTTCAGGGTGACCTCATGGTCAG 694901 >seq55 Length=1670966 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | |||||||| |||||| | || || | | | | | || ||| || | Sbjct 298437 CCTCATGCTGCACATGACACGTATATCTCTGTTCCTCTCGGGAAAGCACCACTAGAGCAG 298496 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||| | ||| || |||||||||||| | || ||||| |||||| || || | | | Sbjct 298497 CCCATTCCTGGAAGGTTCCATCTCCACCAGGCCTGGTGTCCACCAGCTTCATGTCCTGGG 298556 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | | | ||||| || | ||| || ||| |||| |||||||| || Sbjct 298557 TCAGGTTCTCCCCATCTCTCTGCCAGGTCAGGGTGATCTCCTCAGGGTAGAAGCCCAGGG 298616 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| ||||| || || || | |||||| Sbjct 298617 CCCAGCATTTCAGGGTGACATTCTGGTCAG 298646 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | || || || || ||| | ||||| | | ||| || | | |||| Sbjct 572654 CCTCATGCTGCACCTGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 572713 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 ||||||||||||| ||||| || || | || ||||| |||||| || ||| | | | Sbjct 572714 CCCACTTCTGAAAGGTTCCGTCACCTCCAGGCCTGGTGTCCACCAGCTCCATGTCCTGGG 572773 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| ||||| || | ||| || |||||||| |||||||| Sbjct 572774 TCAGGTTCTC----CCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCC 572829 Query 525 GTGGCCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||||| ||||| || || || | | ||| || Sbjct 572830 AGGGCCCAGCATTTCAGGGTGACCTCATGGTTAG 572863 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 833607 CCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGGACCACCACAGCTG 833666 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| | || ||||| |||||| || ||| | | | Sbjct 833667 CCCACTTCTGGAAGGTTCCATCTCCCCCAGGCCTGGTGTCCACCAGCTCCATGTCCTGGG 833726 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| ||||| || | ||| || |||||||| |||||||| Sbjct 833727 TCAGGTTCTC----CCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCC 833782 Query 525 GTGGCCCAACATTTTAGTGTTACTTGACGGTCAGGTG 561 |||||| || | || || || | | | |||| || Sbjct 833783 AGGGCCCAGCACCTCAGGGTGACCTCATGCTCAGATG 833819 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/191 (70%), Gaps = 8/191 (4%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || | ||| | ||||| | | ||| || | | |||| Sbjct 642759 CCTCATGCTGCACATGGCACATGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 642818 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| | || ||||| ||||||||| ||| | | | Sbjct 642819 CCCACTTCTGGAAGGTTCCATCTCCCCCAGGCCTGGTCTCCACCTGCTCCATGTCCTGGG 642878 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| ||||| || | ||| || |||||||| |||||||| Sbjct 642879 TCAGGTTCTC----CCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCC 642934 Query 525 GTGGCCCAACA 535 |||||| || Sbjct 642935 AGGGCCCAGCA 642945 >seq201 Length=17586 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/203 (70%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 7674 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGGAGGCACCACCACAGCTG 7615 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || | || ||||| |||||| || |||| || | Sbjct 7614 CCCACTTCTGGAAGGTTCCATTGCCCCCAGGCCTGGTATCCACCAGCTCCACGTTCTCGG 7555 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| ||||| || | ||| ||| ||||||| |||||||| Sbjct 7554 TCAGGTTCTC----CCCATCTCGCTGCCAGGTAAGGGTGATGCCCGCAGGGTAGAAGCCC 7499 Query 525 GTGGCCCAACATTTTAGTGTTAC 547 |||||| ||||| || || || Sbjct 7498 AGGGCCCAGCATTTCAGGGTGAC 7476 >seq131 Length=60845 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATG---CTCTTTATGTGCAGGTACTTCTATGG 405 ||||||| | |||||||| ||||| | || |||| || | | | || ||| | Sbjct 6290 CCTCATGCTGCACATGACACATATATCTCTGTTCCTCTCTA---GAAAGCACCACTAGAG 6234 Query 406 CTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCAT 465 | ||||| ||||| || |||||||||||| | || ||||| |||||| || ||| | | Sbjct 6233 CAGCCCATTTCTGGAAGGTTCCATCTCCACCAGGCCTGGTGTCCACCAGCTCCATGTCCT 6174 Query 466 CAGTCAGTTGCTCTGC-TCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 ||||| | ||| | || | | ||||| || | ||| || |||||||| ||||| || Sbjct 6173 TGGTCAGGTTCTCCCCATCTCGT-TGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAACCC 6115 Query 525 GTGGCCCAACATTT 538 |||||| ||||| Sbjct 6114 AGGGCCCAGCATTT 6101 >seq195 Length=16805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 10104 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGGAGGCACCACCACAGCTG 10045 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||| || | || ||||| |||||| || ||| || | Sbjct 10044 CCCACTTCTGGAAGGTTCCATTGCCCCCAGGCCTGGTGTCCACCAGCTCCATGTTCTCGG 9985 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| ||||| || | ||| ||| ||||||| |||||||| Sbjct 9984 TCAGGTTCTC----CCCATCTCGCTGCCAGGTCAGGGTGATGCCCGCAGGGTAGAAGCCC 9929 Query 525 GTGGCCCAACATTTTAGTGTTAC 547 |||||| ||||| || || || Sbjct 9928 AGGGCCCAGCATTTGAGGGTGAC 9906 >seq67 Length=640780 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | ||| || | | |||| Sbjct 303895 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 303836 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| | || ||||| |||||| || | | | | Sbjct 303835 CCCACTTCTGGAAGGTTCCATCTCCCCCAGGCCTGGTGTCCACCAGCTCTGTGTCCTGGG 303776 Query 469 TCAGTTGCTCTGCTCCCAT----GTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 |||| | ||| ||||| ||||| || | ||| || |||||||| |||||||| Sbjct 303775 TCAGGTTCTC----CCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCC 303720 Query 525 GTGGCCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||||| || || || || || | | | |||| Sbjct 303719 AGGGCCCAGCACTTCAGGGTGACCTCATGCTCAG 303686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397737311010240