Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq9 116 4e-21
seq15 102 9e-17
seq20 84.2 2e-11
>seq9
Length=63840602
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044
|| ||||| || || | |||||| ||||| || | |||||||| || |||||||| ||
Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493
Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104
| ||| ||||||| ||||||||||||||| ||||| || |||||||| || ||||| ||
Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGCT 25234433
Query 19105 ACTAGTCTTTCTCC 19118
|| | ||||| ||
Sbjct 25234432 ACCACCCTTTCCCC 25234419
Score = 89.7 bits (98), Expect = 6e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393
|||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| |
Sbjct 25231289 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 25231233
Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453
|| ||||||| || |||||||| | | | ||||||| | || ||| || |
Sbjct 25231232 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAATGAGGAAGATCCTTTG 25231173
Query 19454 ATAAATCTAC 19463
|||| || ||
Sbjct 25231172 ATAAGTCAAC 25231163
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520
||| ||||| ||||||| || || |||| ||| | ||||||||| |||||||||||| |
Sbjct 25228418 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCATATATCAGG 25228359
Query 19521 ATATTGTATAGGAAATATAACAAATC 19546
||| || || ||||| || |||||||
Sbjct 25228358 ATACTGGATTGGAAAGATGACAAATC 25228333
>seq15
Length=51729835
Score = 102 bits (112), Expect = 9e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || || || || || ||||| || |||
Sbjct 36813108 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAT 36813167
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
||||||||||| | || ||||||||||| || |||||||| | |||| | ||| ||
Sbjct 36813168 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAACTG 36813227
Query 47448 TTTCTTACTCCATA 47461
||||||| |||||
Sbjct 36813228 TTTCTTATACCATA 36813241
>seq20
Length=39541208
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Plus
Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTT 18673
|| ||| |||| | | |||||||||||| || | || ||| || ||||| | |
Sbjct 37613844 AAGTCAGCATCAAGGGTGAAAGAATTCTCTG--TTGAACTTGACATCACGCCCATCCTCT 37613901
Query 18674 GATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCA 18733
|||| ||| | || || ||||| ||||| || |||||||| || | ||| ||| ||||
Sbjct 37613902 GATACTCGCCTACCCTCTTTTCGAAGAAGTTGGTTTTTCCTTCCAGTGAAATATTCTCCA 37613961
Query 18734 TAAAATCAAATGGATTTTTTAC 18755
|||| ||||||||||||| |||
Sbjct 37613962 TAAAGTCAAATGGATTTTCTAC 37613983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562094466225600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |