Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 116 4e-21 seq15 102 9e-17 seq20 84.2 2e-11 >seq9 Length=63840602 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | |||||||| || |||||||| || Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| ||||||| ||||||||||||||| ||||| || |||||||| || ||||| || Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGCT 25234433 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 25234432 ACCACCCTTTCCCC 25234419 Score = 89.7 bits (98), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 19334 AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATA 19393 |||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||| | Sbjct 25231289 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 25231233 Query 19394 CATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAG 19453 || ||||||| || |||||||| | | | ||||||| | || ||| || | Sbjct 25231232 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAATGAGGAAGATCCTTTG 25231173 Query 19454 ATAAATCTAC 19463 |||| || || Sbjct 25231172 ATAAGTCAAC 25231163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520 ||| ||||| ||||||| || || |||| ||| | ||||||||| |||||||||||| | Sbjct 25228418 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCATATATCAGG 25228359 Query 19521 ATATTGTATAGGAAATATAACAAATC 19546 ||| || || ||||| || ||||||| Sbjct 25228358 ATACTGGATTGGAAAGATGACAAATC 25228333 >seq15 Length=51729835 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || ||| Sbjct 36813108 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAT 36813167 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | || ||||||||||| || |||||||| | |||| | ||| || Sbjct 36813168 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAACTG 36813227 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 36813228 TTTCTTATACCATA 36813241 >seq20 Length=39541208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTT 18673 || ||| |||| | | |||||||||||| || | || ||| || ||||| | | Sbjct 37613844 AAGTCAGCATCAAGGGTGAAAGAATTCTCTG--TTGAACTTGACATCACGCCCATCCTCT 37613901 Query 18674 GATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCA 18733 |||| ||| | || || ||||| ||||| || |||||||| || | ||| ||| |||| Sbjct 37613902 GATACTCGCCTACCCTCTTTTCGAAGAAGTTGGTTTTTCCTTCCAGTGAAATATTCTCCA 37613961 Query 18734 TAAAATCAAATGGATTTTTTAC 18755 |||| ||||||||||||| ||| Sbjct 37613962 TAAAGTCAAATGGATTTTCTAC 37613983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562094466225600