Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq55 158 1e-32
seq25 109 4e-18
seq31 89.7 4e-12
>seq55
Length=1670966
Score = 158 bits (174), Expect = 1e-32
Identities = 256/365 (70%), Gaps = 10/365 (3%)
Strand=Plus/Minus
Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237
|||||||| |||||| | ||||| || | ||||||||| | || || ||||||||
Sbjct 1141744 TTTGATGCCAAACGTCTCATTGGTAGGAAATTTAATGATCCTGTAGTGCAATCAGATATG 1141685
Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATTGAAGCTACTC 550295
|||| ||||||||| ||| | || |||| ||| ||||| | || || | | |
Sbjct 1141684 AAGCTTTGGCCTTTTCAAGTGGTCAATGAAGGTGGGAAACCGAAAGTAATG--GTTTCCT 1141627
Query 550296 ATGAAGGATCTGTTAAACAA---TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352
| |||| | ||| || || | || ||| |||| || |||||||| | | |
Sbjct 1141626 ACAAAGGG---GAGAAAAAAGCCTTCTACCCTGAAGAAATCTCTTCTATGGTGCTTACTA 1141570
Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412
| ||||| | ||||| |||||| | || || || || |||| ||||| ||||
Sbjct 1141569 AGATGAAGGAGACAGCTGAGGCTTTTTTGGGCCATCCTGTCACCAATGCTGTAATCACTG 1141510
Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472
| ||||| |||||||||||||| || || ||||| || ||||||||||| || || |
Sbjct 1141509 TGCCAGCCTATTTTAATGACTCTCAGCGCCAAGCCACCAAAGATGCTGGTGTGATCGCAG 1141450
Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
| || ||||| || | |||||||||||||| || || ||||| | || ||||| | |
Sbjct 1141449 GTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCGGCTGCCATCGCCTATGGTTTAG 1141390
Query 550533 ATAAA 550537
|||||
Sbjct 1141389 ATAAA 1141385
>seq25
Length=34219090
Score = 109 bits (120), Expect = 4e-18
Identities = 121/159 (76%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 550371 GTGCTTTTG-TTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428
|||||||| || || ||| ||||| ||||||| | || ||||| || ||||||||
Sbjct 16172511 GTGCTTTTTCTTATTCTAGACTGTTACCAATGCAGTGGTCACAGTACCTGCTTATTTTAA 16172570
Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488
|||||| || ||||| || || ||||||||||| |||||||| || ||||| || |
Sbjct 16172571 TGACTCTCAGCGTCAGGCCACCAAAGATGCTGGGACCATTGCTGGTCTCAATGTACTAAG 16172630
Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|| || ||||| || ||||||||||| | || |||||
Sbjct 16172631 AATCATTAATGAGCCAACTGCTGCTGCTATCGCGTATGG 16172669
Score = 105 bits (116), Expect = 5e-17
Identities = 136/186 (73%), Gaps = 4/186 (2%)
Strand=Plus/Plus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
|| || ||| | || ||||| || ||||| ||||||| ||| | || ||||| |||
Sbjct 16171593 GGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTTTTCCAACACGGGAAAGTGGAA 16171652
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| |||||||||||||| || ||| | || || || ||||| | ||||| || |||
Sbjct 16171653 ATAATTGCCAATGATCAGGGAAACCGCACCACCCCGAGCTATGTCGCATTCACTGATACT 16171712
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175
|||| || |||||||||||||||| |||||| || || || || ||||| ||
Sbjct 16171713 GAACGATTGATTGGTGATGCAGCAAAGAATCAAGTTGCAATG--AACCCCACCAACACGG 16171770
Query 550176 TTTTTG 550181
||||||
Sbjct 16171771 TTTTTG 16171776
>seq31
Length=25890693
Score = 89.7 bits (98), Expect = 4e-12
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351
||| ||||| |||| | ||||| | |||||| ||||||||||| ||||| || |||||
Sbjct 2479956 AATGTTGTAGTCAGACAAAGTTCGTCCATCTTCCAGTTGTTTTCCAGCAAAGATTAGTCT 2479897
Query 563352 TTGCTGATCAGGAGGAATTCCT 563373
|||||||||||||||||| |||
Sbjct 2479896 TTGCTGATCAGGAGGAATACCT 2479875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029188115599600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |