Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq55 158 1e-32 seq25 109 4e-18 seq31 89.7 4e-12 >seq55 Length=1670966 Score = 158 bits (174), Expect = 1e-32 Identities = 256/365 (70%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 |||||||| |||||| | ||||| || | ||||||||| | || || |||||||| Sbjct 1141744 TTTGATGCCAAACGTCTCATTGGTAGGAAATTTAATGATCCTGTAGTGCAATCAGATATG 1141685 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATTGAAGCTACTC 550295 |||| ||||||||| ||| | || |||| ||| ||||| | || || | | | Sbjct 1141684 AAGCTTTGGCCTTTTCAAGTGGTCAATGAAGGTGGGAAACCGAAAGTAATG--GTTTCCT 1141627 Query 550296 ATGAAGGATCTGTTAAACAA---TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | |||| | ||| || || | || ||| |||| || |||||||| | | | Sbjct 1141626 ACAAAGGG---GAGAAAAAAGCCTTCTACCCTGAAGAAATCTCTTCTATGGTGCTTACTA 1141570 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | ||||| | ||||| |||||| | || || || || |||| ||||| |||| Sbjct 1141569 AGATGAAGGAGACAGCTGAGGCTTTTTTGGGCCATCCTGTCACCAATGCTGTAATCACTG 1141510 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | ||||| |||||||||||||| || || ||||| || ||||||||||| || || | Sbjct 1141509 TGCCAGCCTATTTTAATGACTCTCAGCGCCAAGCCACCAAAGATGCTGGTGTGATCGCAG 1141450 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 | || ||||| || | |||||||||||||| || || ||||| | || ||||| | | Sbjct 1141449 GTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCGGCTGCCATCGCCTATGGTTTAG 1141390 Query 550533 ATAAA 550537 ||||| Sbjct 1141389 ATAAA 1141385 >seq25 Length=34219090 Score = 109 bits (120), Expect = 4e-18 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 550371 GTGCTTTTG-TTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||||||| || || ||| ||||| ||||||| | || ||||| || |||||||| Sbjct 16172511 GTGCTTTTTCTTATTCTAGACTGTTACCAATGCAGTGGTCACAGTACCTGCTTATTTTAA 16172570 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 |||||| || ||||| || || ||||||||||| |||||||| || ||||| || | Sbjct 16172571 TGACTCTCAGCGTCAGGCCACCAAAGATGCTGGGACCATTGCTGGTCTCAATGTACTAAG 16172630 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || ||||| || ||||||||||| | || ||||| Sbjct 16172631 AATCATTAATGAGCCAACTGCTGCTGCTATCGCGTATGG 16172669 Score = 105 bits (116), Expect = 5e-17 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || ||||| ||||||| ||| | || ||||| ||| Sbjct 16171593 GGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTTTTCCAACACGGGAAAGTGGAA 16171652 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| | || || || ||||| | ||||| || ||| Sbjct 16171653 ATAATTGCCAATGATCAGGGAAACCGCACCACCCCGAGCTATGTCGCATTCACTGATACT 16171712 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 |||| || |||||||||||||||| |||||| || || || || ||||| || Sbjct 16171713 GAACGATTGATTGGTGATGCAGCAAAGAATCAAGTTGCAATG--AACCCCACCAACACGG 16171770 Query 550176 TTTTTG 550181 |||||| Sbjct 16171771 TTTTTG 16171776 >seq31 Length=25890693 Score = 89.7 bits (98), Expect = 4e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| | ||||| | |||||| ||||||||||| ||||| || ||||| Sbjct 2479956 AATGTTGTAGTCAGACAAAGTTCGTCCATCTTCCAGTTGTTTTCCAGCAAAGATTAGTCT 2479897 Query 563352 TTGCTGATCAGGAGGAATTCCT 563373 |||||||||||||||||| ||| Sbjct 2479896 TTGCTGATCAGGAGGAATACCT 2479875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029188115599600