Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq67 84.2 3e-11
seq122 82.4 1e-10
seq90 82.4 1e-10
seq55 82.4 1e-10
>seq67
Length=640780
Score = 84.2 bits (92), Expect = 3e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | || |||||||| ||| ||||||||||| || || | ||||
Sbjct 180474 CCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 180415
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || |||| || | || | || |||| | |||| | || ||
Sbjct 180414 GCCCACTTCTGGAAGGTTCCATTCCCCTCAGGCCTGGTGTCTACCAGCTCCATGTCCTGG 180355
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| | ||||| || ||||||||||| || | | || || || || || || ||||
Sbjct 180354 GTCAGGTCTTCCCCATCTCGATACCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 180295
Query 14358 GCCCAGCAC 14366
|||||||||
Sbjct 180294 GCCCAGCAC 180286
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| |||||||| || | ||||||||||| ||| ||||||||||| || || | |||
Sbjct 136448 CCCTCATGTTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCC 136389
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| ||| | || | || || | | ||| || || ||
Sbjct 136388 GCCCACTTCTGGAAGGTTCCATCCCCACCAGGCCTAGTGTCCACCAACTCCGTGTCCTGG 136329
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| | || || || ||||| | ||| || | | || || || || || || ||||
Sbjct 136328 GTCAGGTCCTCCCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 136269
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 136268 GCCCAGCACC 136259
>seq122
Length=66457
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | || |||||||| ||| ||||||||||| || || | ||||
Sbjct 1912 CCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 1971
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| || | || | || || | | ||||||| || ||
Sbjct 1972 GCCCACTTCTGGAAGGTTCCATCCCCCCCAGGCCTGGTCTCCACCAGCTCTGTGTCCTGG 2031
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| | || || || ||||| | ||| || | | || || || || || || ||||
Sbjct 2032 GTCAGGTCCTCCCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 2091
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 2092 GCCCAGCACC 2101
>seq90
Length=176824
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | || ||||||| ||||||||||||||| || || | |||
Sbjct 40212 CCCTCATGCTGCACATGGCACATGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCC 40153
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
||||| || || || || ||||| || | || | || || | | ||||||| || ||
Sbjct 40152 ACCCACTTCTGGAAGGTTCCATCCCCCCCAGGCCTGGTGTCCACCAGCTCTGTGTCCTGG 40093
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
|| | | || || ||||| | ||| || | | || || || || || || ||||
Sbjct 40092 GTTAGGTTCTCCCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 40033
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 40032 GCCCAGCACC 40023
>seq55
Length=1670966
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||||||||||| ||| ||||||||||| || || | ||||
Sbjct 2605 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 2664
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || || || || | || | || || | | |||| || || ||
Sbjct 2665 GCCCACTTCTGGAAGGTTCCGTCCCCCCCAGGCCTGGTCTCCACCAGCTCCGTGTCCTGG 2724
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| | || ||||| ||||| | ||| || | | || ||||| || || || |||
Sbjct 2725 GTCAGGTCCTCTCCATCTCGCTGCCAGGTCAGGGTGATCTCAGCAGGGTAGAAGTCCAGG 2784
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 2785 GCCCAGCACC 2794
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||||||||||| ||| |||||||||||||| || | ||||
Sbjct 833606 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGGACCACCACAGCT 833665
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || |||||||| | || | || || | | |||| | || ||
Sbjct 833666 GCCCACTTCTGGAAGGTTCCATCTCCCCCAGGCCTGGTGTCCACCAGCTCCATGTCCTGG 833725
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
| | | || || ||||| | ||| || | | || || || || || || ||||
Sbjct 833726 GTCAGGTTCTCCCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 833785
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 833786 GCCCAGCACC 833795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629267153278400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |