Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq67 84.2 3e-11 seq122 82.4 1e-10 seq90 82.4 1e-10 seq55 82.4 1e-10 >seq67 Length=640780 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | || |||||||| ||| ||||||||||| || || | |||| Sbjct 180474 CCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 180415 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||| || | || | || |||| | |||| | || || Sbjct 180414 GCCCACTTCTGGAAGGTTCCATTCCCCTCAGGCCTGGTGTCTACCAGCTCCATGTCCTGG 180355 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | | ||||| || ||||||||||| || | | || || || || || || |||| Sbjct 180354 GTCAGGTCTTCCCCATCTCGATACCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 180295 Query 14358 GCCCAGCAC 14366 ||||||||| Sbjct 180294 GCCCAGCAC 180286 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || |||||||| || | ||||||||||| ||| ||||||||||| || || | ||| Sbjct 136448 CCCTCATGTTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCC 136389 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| ||| | || | || || | | ||| || || || Sbjct 136388 GCCCACTTCTGGAAGGTTCCATCCCCACCAGGCCTAGTGTCCACCAACTCCGTGTCCTGG 136329 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | | || || || ||||| | ||| || | | || || || || || || |||| Sbjct 136328 GTCAGGTCCTCCCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 136269 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 136268 GCCCAGCACC 136259 >seq122 Length=66457 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | || |||||||| ||| ||||||||||| || || | |||| Sbjct 1912 CCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 1971 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || | || | || || | | ||||||| || || Sbjct 1972 GCCCACTTCTGGAAGGTTCCATCCCCCCCAGGCCTGGTCTCCACCAGCTCTGTGTCCTGG 2031 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | | || || || ||||| | ||| || | | || || || || || || |||| Sbjct 2032 GTCAGGTCCTCCCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 2091 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 2092 GCCCAGCACC 2101 >seq90 Length=176824 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | || ||||||| ||||||||||||||| || || | ||| Sbjct 40212 CCCTCATGCTGCACATGGCACATGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCC 40153 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 ||||| || || || || ||||| || | || | || || | | ||||||| || || Sbjct 40152 ACCCACTTCTGGAAGGTTCCATCCCCCCCAGGCCTGGTGTCCACCAGCTCTGTGTCCTGG 40093 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 || | | || || ||||| | ||| || | | || || || || || || |||| Sbjct 40092 GTTAGGTTCTCCCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 40033 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 40032 GCCCAGCACC 40023 >seq55 Length=1670966 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| ||||||||||| || || | |||| Sbjct 2605 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCT 2664 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || || || || | || | || || | | |||| || || || Sbjct 2665 GCCCACTTCTGGAAGGTTCCGTCCCCCCCAGGCCTGGTCTCCACCAGCTCCGTGTCCTGG 2724 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | | || ||||| ||||| | ||| || | | || ||||| || || || ||| Sbjct 2725 GTCAGGTCCTCTCCATCTCGCTGCCAGGTCAGGGTGATCTCAGCAGGGTAGAAGTCCAGG 2784 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 2785 GCCCAGCACC 2794 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||| |||||||||||||| || | |||| Sbjct 833606 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCCTCTCCAGAAGGGACCACCACAGCT 833665 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||||||| | || | || || | | |||| | || || Sbjct 833666 GCCCACTTCTGGAAGGTTCCATCTCCCCCAGGCCTGGTGTCCACCAGCTCCATGTCCTGG 833725 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | | | || || ||||| | ||| || | | || || || || || || |||| Sbjct 833726 GTCAGGTTCTCCCCATCTCGCTGCCAGGTCAGGGTGATCTCCGCAGGGTAGAAGCCCAGG 833785 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 833786 GCCCAGCACC 833795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629267153278400