Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq23 315 6e-81
seq16 120 2e-22
seq7 91.5 1e-13
>seq23
Length=36106517
Score = 315 bits (348), Expect = 6e-81
Identities = 485/689 (70%), Gaps = 6/689 (1%)
Strand=Plus/Plus
Query 29767 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 29826
||||| || || || || | || ||||| || || || || | ||||| ||||||
Sbjct 32444305 GGAAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAA 32444364
Query 29827 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29886
| ||| || ||||||| || || ||||| || || || | || ||||||| ||| ||
Sbjct 32444365 ATGTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCA 32444424
Query 29887 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 29946
|||||| | ||||| || ||||||||||| || || ||||| || || || ||||||||
Sbjct 32444425 ATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCT 32444484
Query 29947 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30006
|| |||||||||| ||||| || |||||||| || | ||| || ||||| || |
Sbjct 32444485 CCTGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGGCAAAGT 32444544
Query 30007 GTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30063
| ||||| ||||| | ||||| |||| ||| ||||| || ||||| || |||| |
Sbjct 32444545 GCATGGCATGGAGGTAAGGCCATCAGAGG---AAGATCTTTTGGATTCCAAGCACACAGG 32444601
Query 30064 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30123
||||| | ||||| ||||||||| | |||| ||| | | ||||||||||||||
Sbjct 32444602 ATGATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCT 32444661
Query 30124 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30183
|| || || || || |||| | || |||| ||||| || ||||| | ||||
Sbjct 32444662 ACTCCTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGCCCCAAAATGTCGCCAC 32444721
Query 30184 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30243
|| || || || || || || | ||||| ||||| |||| ||| ||| |||||
Sbjct 32444722 TGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCC 32444781
Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30303
|||||||||| |||||| ||||| ||||| || || || || || || || || ||
Sbjct 32444782 AAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTA 32444841
Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363
| |||||||| || ||| ||||||| |||||| |||| || | ||||| || ||
Sbjct 32444842 GCATTTGTGGATCCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAACA 32444901
Query 30364 CTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAAC 30423
| ||||| || || || ||||| | | | |||| ||| ||||| || |||
Sbjct 32444902 CGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAAC 32444961
Query 30424 ACGGACAAGACTCCCGTGCCCGTCCTGTC 30452
|| |||| | || |||||||| | |||
Sbjct 32444962 ACCGACAGGGTGCCGGTGCCCGTGCGGTC 32444990
>seq16
Length=47638275
Score = 120 bits (132), Expect = 2e-22
Identities = 125/164 (76%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| ||||||| ||| || |||||| | ||||| || ||||||||||| || || |||||
Sbjct 10752372 AGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGC 10752431
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || ||||||||||| ||||| || |||||||| || | |
Sbjct 10752432 ACACCCAGGCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCACC 10752491
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|| || ||||| || | | ||||| ||||| | ||||| ||
Sbjct 10752492 ACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATCAG 10752535
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217
|||| ||||| || ||||| | |||||| || || || || || || | ||||| ||||
Sbjct 10755855 TGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTT 10755914
Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277
| |||| ||| ||| ||||||||||||||| |||||| ||||| ||||| || |
Sbjct 10755915 CTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTT 10755974
Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
| || || || || || || || | |||||||| ||
Sbjct 10755975 TCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCC 10756014
>seq7
Length=65339388
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| ||||| || || |||||| | | ||| | ||| || || ||
Sbjct 33161258 TTGAGTTCTCTACTGAGAACTACATTAATTCTGTCTTTTAAAGGCCGATTTTTCTCAGGA 33161199
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||||||||| |||||||| ||||||| ||||| || |||
Sbjct 33161198 ATGGAGAACCAAGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 33161151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408607440744920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |