Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq24 185 2e-41 seq20 93.3 8e-14 seq8 84.2 4e-11 >seq24 Length=35080050 Score = 185 bits (204), Expect = 2e-41 Identities = 189/245 (77%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||| ||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 34787828 AGCAGCTGGCAGCCATTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 34787885 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| |||| | ||||| | ||||| || ||||| || | |||||| ||||| Sbjct 34787886 GCTCCCGGAGAAGGCCAGCGGTGCTTGACAGCCCAGCGTTCTCGGCCTTGAGTGTCTTCA 34787945 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||| ||||| ||||| || ||| ||||| || ||||| |||| Sbjct 34787946 CCTTGTCCTCCAGGCGCGCAATGCGCTCCAGCTTCCGCTTCCGGCACTTAGTGGCCGCCA 34788005 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | ||||||||||||||||| ||||||| ||| | Sbjct 34788006 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGTTCCTGGTCTTCCATGTTGATGG 34788065 Query 241623 GAGAC 241627 | ||| Sbjct 34788066 GGGAC 34788070 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC--- 241471 ||||||| ||| ||||| || |||||||| || ||||| | | || || |||| Sbjct 30216090 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGTAGGCTTGCTGT---GGACGCT 30216034 Query 241472 AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCC 241531 || | | ||| | ||||||| |||||| |||||||| || |||| |||||| ||| Sbjct 30216033 AGCTCAGTGTTCTGGCTCTTGAGCGTCTTCACCTTCTCCTCGAGGCGCGAGATGCGCTCC 30215974 Query 241532 AGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCC 241591 || || ||| ||||| || | |||||| | |||||| || |||| ||| || |||||| Sbjct 30215973 AGCTTACGCTTTCGGCACTTAGAGGCTGCGATGCGGTTGCGTAGTCGCTTGCGCTCCGCC 30215914 Query 241592 TTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || ||||| ||||| ||||||||||| || ||| Sbjct 30215913 TTAATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 30215878 >seq20 Length=39541208 Score = 93.3 bits (102), Expect = 8e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | ||| || || | ||||| || ||| |||||||| | ||| | | ||| Sbjct 37615174 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCTTG 37615233 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||||| | ||| ||||| |||||||||||||| || |||||||||||||| || Sbjct 37615234 AGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGGC 37615292 >seq8 Length=64163821 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 33396613 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTTCTTTTCCGGCACTTGGAGGCG 33396672 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| || || ||| |||||||||| Sbjct 33396673 GCGATGCGGTTCCTCATGCGCTTCCTCTCGGCCTTGATCCGCTCTTGGGACTCCATGTCG 33396732 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 33396733 ATGGGGGAC 33396741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931509045913600