Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq24 185 2e-41
seq20 93.3 8e-14
seq8 84.2 4e-11
>seq24
Length=35080050
Score = 185 bits (204), Expect = 2e-41
Identities = 189/245 (77%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442
||| |||| ||||| | || ||||| | || ||||| ||||||||| ||||||||||
Sbjct 34787828 AGCAGCTGGCAGCCATTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 34787885
Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502
| ||||| |||| | ||||| | ||||| || ||||| || | |||||| |||||
Sbjct 34787886 GCTCCCGGAGAAGGCCAGCGGTGCTTGACAGCCCAGCGTTCTCGGCCTTGAGTGTCTTCA 34787945
Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562
| || |||||||| ||||| ||||| ||||| || ||| ||||| || ||||| ||||
Sbjct 34787946 CCTTGTCCTCCAGGCGCGCAATGCGCTCCAGCTTCCGCTTCCGGCACTTAGTGGCCGCCA 34788005
Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622
|||||||| || | ||| || ||| | ||||||||||||||||| ||||||| ||| |
Sbjct 34788006 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGTTCCTGGTCTTCCATGTTGATGG 34788065
Query 241623 GAGAC 241627
| |||
Sbjct 34788066 GGGAC 34788070
Score = 129 bits (142), Expect = 1e-24
Identities = 159/216 (74%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGAC--- 241471
||||||| ||| ||||| || |||||||| || ||||| | | || || ||||
Sbjct 30216090 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGTAGGCTTGCTGT---GGACGCT 30216034
Query 241472 AGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCC 241531
|| | | ||| | ||||||| |||||| |||||||| || |||| |||||| |||
Sbjct 30216033 AGCTCAGTGTTCTGGCTCTTGAGCGTCTTCACCTTCTCCTCGAGGCGCGAGATGCGCTCC 30215974
Query 241532 AGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCC 241591
|| || ||| ||||| || | |||||| | |||||| || |||| ||| || ||||||
Sbjct 30215973 AGCTTACGCTTTCGGCACTTAGAGGCTGCGATGCGGTTGCGTAGTCGCTTGCGCTCCGCC 30215914
Query 241592 TTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
|| ||||| ||||| ||||||||||| || |||
Sbjct 30215913 TTAATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 30215878
>seq20
Length=39541208
Score = 93.3 bits (102), Expect = 8e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
|| || | ||| || || | ||||| || ||| |||||||| | ||| | | |||
Sbjct 37615174 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCTTG 37615233
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
||||||||||| | ||| ||||| |||||||||||||| || |||||||||||||| ||
Sbjct 37615234 AGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGGC 37615292
>seq8
Length=64163821
Score = 84.2 bits (92), Expect = 4e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 33396613 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTTCTTTTCCGGCACTTGGAGGCG 33396672
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | || |||||||| || || ||| ||||||||||
Sbjct 33396673 GCGATGCGGTTCCTCATGCGCTTCCTCTCGGCCTTGATCCGCTCTTGGGACTCCATGTCG 33396732
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 33396733 ATGGGGGAC 33396741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931509045913600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |