Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 1e-12 seq20 87.8 3e-12 >seq9 Length=63840602 Score = 89.7 bits (98), Expect = 1e-12 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || ||||||||||||||||||| || ||||| || ||| || || ||||| || || | Sbjct 25234426 GGGTGGTAGCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCTGCTATAT 25234485 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 | ||||| ||| | ||| || | |||||| || || |||||||| || ||||||||| Sbjct 25234486 TTTGGCTGAAG-AAAAGAGGTCTCATGCCTGGACTCACTTTTTCCAATGAACTCATCAGC 25234544 Query 25999 AGGGACGA 26006 || || || Sbjct 25234545 AGAGATGA 25234552 >seq20 Length=39541208 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| |||| ||||| || || ||||| || ||||| ||| ||||| |||||| Sbjct 37615307 GGAGAGCGGGTGGTGGCCTTCGCGGCAGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCG 37615248 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||| |||||||||||| | ||| ||||| || || |||||||| || || Sbjct 37615247 TCCATTTTCTGGCTCAAGAAACGCGGGTTGATGCCTGGCCTCACATTTTCCAATGAACTT 37615188 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||| || |||| Sbjct 37615187 ATTAGCAGAGATGAGG 37615172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928821114457600