Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq55 152 3e-31 seq25 123 2e-22 >seq55 Length=1670966 Score = 152 bits (168), Expect = 3e-31 Identities = 368/552 (67%), Gaps = 4/552 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| || || || || || | || || || ||| ||||| | || | || | | Sbjct 1141935 GAATGGCCATCGGCATCGACCTGGGCACCACCTACTCGTGTGTGGGCGTGTTCCAGCACG 1141876 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | || || || || || ||||| ||||| || ||| | || || || || || | | Sbjct 1141875 GCAAGGTGGAGATCATCGCCAACGACCAGGGCAATCGCACCACCCCCAGCTACGTGGCCT 1141816 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 | || || || || | || || || || || || || | || | || ||||| Sbjct 1141815 TCACCGACACGGAGCGGCTGATAGGCGACGCGGCCAAGAACCAGGTAGCCATGAATCCCC 1141756 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || | |||||||| ||| | | |||||| | || ||| ||||| | || | Sbjct 1141755 AGAACACCGTCTTTGATGCCAAACGTCTCATTGGTAGGAAATTTAATGATCCTGTAGTGC 1141696 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 |||| |||||| | |||||||||| | ||| | |||| ||||| ||||| | || Sbjct 1141695 AATCAGATATGAAGCTTTGGCCTTTTCAAGTGGTCAATGAAGGTGGGAAACCGAAAGTA- 1141637 Query 474624 AAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | | | | || ||| || | ||| || | || ||| |||| ||||| ||||| Sbjct 1141636 ATGGTTTCCTACAAAGGGGAGAAAAAAGCCTTCTACCCTGAAGAAATCTCTTCTATGGTG 1141577 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | | || ||||| | || || ||| | | | | || || || || |||| || Sbjct 1141576 CTTACTAAGATGAAGGAGACAGCTGAGG-CTTTTTTGGGCCATCCTGTCACCAATGCTGT 1141518 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 ||| ||||| ||||| ||||||||||| ||||| || ||||| || |||||||| || Sbjct 1141517 AATCACTGTGCCAGCCTATTTTAATGACTCTCAGCGCCAAGCCACCAAAGATGCTGGTGT 1141458 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || |||||||| ||||| || | ||||| |||||||| ||||| || || | || || Sbjct 1141457 GATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCGGCTGCCATCGCCTA 1141398 Query 474862 TGGTCTTGATAA 474873 |||| | ||||| Sbjct 1141397 TGGTTTAGATAA 1141386 Score = 98.7 bits (108), Expect = 6e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || |||||||| ||||||||||||||||| ||||| || || ||||| |||||||| Sbjct 1140559 GGAATCCCTCCTGCACCCAGAGGAGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCC 1140500 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||||||||| ||||| || ||| Sbjct 1140499 AATGGTATTCTCAATGTAACAGCT 1140476 >seq25 Length=34219090 Score = 123 bits (136), Expect = 2e-22 Identities = 225/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||| ||||||||||| | || ||||| || || | | | ||||| || Sbjct 16172998 ACTGCTTGTGAGCGTGCTAAGCGTACGCTCTCTTCCAGCACCCAGGCCAGTATTGAAATT 16173057 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 ||||| || | ||||||||| || | |||| ||||| | ||| ||||||||| Sbjct 16173058 GATTCACTCTATGAAGGAATCGACTTCTATACCTCCATTACCCGTGCTCGATTTGAAGAA 16173117 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| | ||| | || | || || ||||| ||| ||| | ||| | Sbjct 16173118 TTGAATGCTGACTTGTTTCGTGGTACCTTGGACCCAGTTGAGAAAGCTCTTCGTGATGCC 16173177 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || || ||||| || || ||||||| ||||| || || || || || || | || || Sbjct 16173178 AAGCTAGACAAGTCCCAGATCCATGATATTGTCCTGGTGGGCGGCTCTACCCGTATCCCC 16173237 Query 475736 AAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 ||||| ||||| | | || || | || ||||| || | || ||| | || | || Sbjct 16173238 AAAAT-TCAGAAACTCCTACAGGATTTCTTCAATGGAAAGGAATTGAATAAGAGCATCAA 16173296 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||||| ||||| || Sbjct 16173297 TCCTGATGAAGCTGTTGCTTATGGTGC 16173323 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || || ||||| ||| ||||| | ||| | || || || |||||||| ||| | Sbjct 16173988 ACCAAGGATAACAACTTGCTTGGCAAGTTTGAACTGACTGGCATACCTCCTGCGCCCCGT 16174047 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| ||||| || ||||||||||||||||| ||||| ||||| |||||| || Sbjct 16174048 GGCGTTCCTCAGATTGAGGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTTTCT 16174107 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 16174108 GCTGTGGATAA 16174118 Score = 95.1 bits (104), Expect = 8e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | || || || || ||||||||||| ||||| ||||| || || ||||||| Sbjct 16172540 ATGCAGTGGTCACAGTACCTGCTTATTTTAATGACTCTCAGCGTCAGGCCACCAAAGATG 16172599 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| ||||| ||||| || | || |||||||| ||||| || || || Sbjct 16172600 CTGGGACCATTGCTGGTCTCAATGTACTAAGAATCATTAATGAGCCAACTGCTGCTGCTA 16172659 Query 474855 TTGCTTATGG 474864 | || ||||| Sbjct 16172660 TCGCGTATGG 16172669 Score = 89.7 bits (98), Expect = 3e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || |||||| | || || || ||| ||||| | ||||| ||| | || ||||| ||| Sbjct 16171593 GGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTTTTCCAACACGGGAAAGTGGAA 16171652 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 |||||||||||||| || || || | || || || ||||| | || ||||| ||| Sbjct 16171653 ATAATTGCCAATGATCAGGGAAACCGCACCACCCCGAGCTATGTCGCATTCACTGATACT 16171712 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493 |||| | ||||| ||||| || || |||||| |||| Sbjct 16171713 GAACGATTGATTGGTGATGCAGCAAAGAATCAAGTTGCA 16171751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268091694501920