Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq55 152 3e-31
seq25 123 2e-22
>seq55
Length=1670966
Score = 152 bits (168), Expect = 3e-31
Identities = 368/552 (67%), Gaps = 4/552 (1%)
Strand=Plus/Minus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383
|||| || || || || || | || || || ||| ||||| | || | || | |
Sbjct 1141935 GAATGGCCATCGGCATCGACCTGGGCACCACCTACTCGTGTGTGGGCGTGTTCCAGCACG 1141876
Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443
| || || || || || ||||| ||||| || ||| | || || || || || | |
Sbjct 1141875 GCAAGGTGGAGATCATCGCCAACGACCAGGGCAATCGCACCACCCCCAGCTACGTGGCCT 1141816
Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503
| || || || || | || || || || || || || | || | || |||||
Sbjct 1141815 TCACCGACACGGAGCGGCTGATAGGCGACGCGGCCAAGAACCAGGTAGCCATGAATCCCC 1141756
Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563
|| || | |||||||| ||| | | |||||| | || ||| ||||| | || |
Sbjct 1141755 AGAACACCGTCTTTGATGCCAAACGTCTCATTGGTAGGAAATTTAATGATCCTGTAGTGC 1141696
Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623
|||| |||||| | |||||||||| | ||| | |||| ||||| ||||| | ||
Sbjct 1141695 AATCAGATATGAAGCTTTGGCCTTTTCAAGTGGTCAATGAAGGTGGGAAACCGAAAGTA- 1141637
Query 474624 AAGCAATAC-ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682
| | | | || ||| || | ||| || | || ||| |||| ||||| |||||
Sbjct 1141636 ATGGTTTCCTACAAAGGGGAGAAAAAAGCCTTCTACCCTGAAGAAATCTCTTCTATGGTG 1141577
Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741
| | || ||||| | || || ||| | | | | || || || || |||| ||
Sbjct 1141576 CTTACTAAGATGAAGGAGACAGCTGAGG-CTTTTTTGGGCCATCCTGTCACCAATGCTGT 1141518
Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801
||| ||||| ||||| ||||||||||| ||||| || ||||| || |||||||| ||
Sbjct 1141517 AATCACTGTGCCAGCCTATTTTAATGACTCTCAGCGCCAAGCCACCAAAGATGCTGGTGT 1141458
Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861
|| |||||||| ||||| || | ||||| |||||||| ||||| || || | || ||
Sbjct 1141457 GATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCGGCTGCCATCGCCTA 1141398
Query 474862 TGGTCTTGATAA 474873
|||| | |||||
Sbjct 1141397 TGGTTTAGATAA 1141386
Score = 98.7 bits (108), Expect = 6e-15
Identities = 72/84 (86%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|| || |||||||| ||||||||||||||||| ||||| || || ||||| ||||||||
Sbjct 1140559 GGAATCCCTCCTGCACCCAGAGGAGTTCCTCAGATTGAGGTGACCTTTGACATTGATGCC 1140500
Query 476150 AATGGTATTCTTAATGTTACTGCT 476173
||||||||||| ||||| || |||
Sbjct 1140499 AATGGTATTCTCAATGTAACAGCT 1140476
>seq25
Length=34219090
Score = 123 bits (136), Expect = 2e-22
Identities = 225/327 (69%), Gaps = 2/327 (1%)
Strand=Plus/Plus
Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555
||||||||||| ||||||||||| | || ||||| || || | | | ||||| ||
Sbjct 16172998 ACTGCTTGTGAGCGTGCTAAGCGTACGCTCTCTTCCAGCACCCAGGCCAGTATTGAAATT 16173057
Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615
||||| || | ||||||||| || | |||| ||||| | ||| |||||||||
Sbjct 16173058 GATTCACTCTATGAAGGAATCGACTTCTATACCTCCATTACCCGTGCTCGATTTGAAGAA 16173117
Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675
| | |||| | ||| | || | || || ||||| ||| ||| | ||| |
Sbjct 16173118 TTGAATGCTGACTTGTTTCGTGGTACCTTGGACCCAGTTGAGAAAGCTCTTCGTGATGCC 16173177
Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735
|| || ||||| || || ||||||| ||||| || || || || || || | || ||
Sbjct 16173178 AAGCTAGACAAGTCCCAGATCCATGATATTGTCCTGGTGGGCGGCTCTACCCGTATCCCC 16173237
Query 475736 AAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794
||||| ||||| | | || || | || ||||| || | || ||| | || | ||
Sbjct 16173238 AAAAT-TCAGAAACTCCTACAGGATTTCTTCAATGGAAAGGAATTGAATAAGAGCATCAA 16173296
Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821
|||||||||||||||||| ||||| ||
Sbjct 16173297 TCCTGATGAAGCTGTTGCTTATGGTGC 16173323
Score = 96.9 bits (106), Expect = 2e-14
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || ||||| ||| ||||| | ||| | || || || |||||||| ||| |
Sbjct 16173988 ACCAAGGATAACAACTTGCTTGGCAAGTTTGAACTGACTGGCATACCTCCTGCGCCCCGT 16174047
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| ||||| || ||||||||||||||||| ||||| ||||| |||||| ||
Sbjct 16174048 GGCGTTCCTCAGATTGAGGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTTTCT 16174107
Query 476171 GCTTGTGATAA 476181
||| |||||
Sbjct 16174108 GCTGTGGATAA 16174118
Score = 95.1 bits (104), Expect = 8e-14
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
||||||| | || || || || ||||||||||| ||||| ||||| || || |||||||
Sbjct 16172540 ATGCAGTGGTCACAGTACCTGCTTATTTTAATGACTCTCAGCGTCAGGCCACCAAAGATG 16172599
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || | ||||| ||||| ||||| || | || |||||||| ||||| || || ||
Sbjct 16172600 CTGGGACCATTGCTGGTCTCAATGTACTAAGAATCATTAATGAGCCAACTGCTGCTGCTA 16172659
Query 474855 TTGCTTATGG 474864
| || |||||
Sbjct 16172660 TCGCGTATGG 16172669
Score = 89.7 bits (98), Expect = 3e-12
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394
|| |||||| | || || || ||| ||||| | ||||| ||| | || ||||| |||
Sbjct 16171593 GGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTTTTCCAACACGGGAAAGTGGAA 16171652
Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454
|||||||||||||| || || || | || || || ||||| | || ||||| |||
Sbjct 16171653 ATAATTGCCAATGATCAGGGAAACCGCACCACCCCGAGCTATGTCGCATTCACTGATACT 16171712
Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCA 474493
|||| | ||||| ||||| || || |||||| ||||
Sbjct 16171713 GAACGATTGATTGGTGATGCAGCAAAGAATCAAGTTGCA 16171751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268091694501920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |