Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq6 345 5e-90 seq3 187 3e-42 seq23 113 5e-20 seq65 89.7 6e-13 seq1 82.4 9e-11 >seq6 Length=67462845 Score = 345 bits (382), Expect = 5e-90 Identities = 668/984 (68%), Gaps = 9/984 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||||||||| |||| |||||||| ||| || | ||| | ||| ||| || ||||| || Sbjct 33399620 CAGATGTTCATCCAAACATTGGATGGCAAAGAGGTCGATGTCCGTGTCAAACTTATTGGC 33399679 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| |||||| ||| | || | ||||| || ||| || | ||||| || || || Sbjct 33399680 AAACAAGTGGTGAACGTGC---AGCAACCAGTTCAAGTCCCCTGCTCCGAAAACACACAC 33399736 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||||| | ||| || || ||||| |||||||| | || || || | | ||||||||| Sbjct 33399737 AGAACGCAGGTGGACCCCATTGCAGGGCGGGTAGGGGGCACCCTTGGAAATGTCACCTTC 33399796 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| || || |||||||| || |||| || |||| Sbjct 33399797 AAAGTACTGCCACTTGACAAACCTGGCGATTGCATGCATGTCAGACATGTCATACTTGTG 33399856 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | | | | || || || | || || | ||| | |||||||| |||| ||| Sbjct 33399857 GCTTAAAGACAGTGACCCTGGCACTTCAGGGATCCTCTGAATAGTGGCCCAGAGGTATTC 33399916 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| |||||||| | ||| || ||||| | |||| | | || Sbjct 33399917 ATCTGGGCTGTATGTGTCCTTTGCCCACTCTATGAATTTCTGGATTTTTTCATTCTTGAG 33399976 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| | || || || | || ||||| || || ||||| || || | | | | Sbjct 33399977 TACGTAATCCACATACTGCCTACTGACTACAAAATAGGCACTGCCTGAAAACAGAGCTGT 33400036 Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531 | |||||| | |||||| |||||||| | || | ||| | || | Sbjct 33400037 TTCCAGAGGCGGGGGCATTTTGTCAGTCCCGGTGTTTGTCAGCTTTCCATCAACGACTAT 33400096 Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591 || |||| |||||||| | | || | || |||||| | |||||| ||||| |||| Sbjct 33400097 ATGATGCTTTTTCCACCTTTCTTTTTTATTCGCTGGCATTCTTTCCGTTTCTAGGTTGTT 33400156 Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651 |||| | ||||| || | | |||| || || || || || || | ||||| || Sbjct 33400157 TTCACCCATTAATGATTTGAGTTTCCTGACAATTTCCAGATTGGTTTTAATAGGAAAATC 33400216 Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711 | || || | || |||| ||||||||| || || ||| | || |||||| ||| Sbjct 33400217 CATGCCACAAAGATTGATCAGGTACTTCCAGTTTGCATTCATGCTGTAGAGGTCCTGCAT 33400276 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 ||| || | || ||||| || || ||||| || || ||||| || ||||| | | ||| Sbjct 33400277 GCAGTTGAGGTCAGCCTGAACACGACTCCACGATGCATACACCACATTCTCCAACTGACT 33400336 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCA---CCGCCAGAAAGAACAT 160828 ||| |||||||||||| |||||| || | || |||| || | |||| |||| | Sbjct 33400337 GGCTACAAAGACGTTACTGAAACAGGATGCAATGCCCATCACTGCAGCCAAAAAGGA--- 33400393 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 || || | ||| ||||||||| | |||||| | ||||||||| ||||| || | Sbjct 33400394 CTCCTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATAGCTCG 33400453 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || || ||||| | || ||||| || ||||| || || Sbjct 33400454 CAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACTACTATAGAATATGCTATTGGGAA 33400513 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 ||| | || || | ||| || | || | ||| | || ||||||| || || Sbjct 33400514 CTCTGCTTCTTCTCTACTAAGAGGTTCGACAATGTATCTGCGATTCTTGATGAATGAAGT 33400573 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 |||||||| |||||||| ||||| Sbjct 33400574 ACAATCCCTGGTCATGTTTATATA 33400597 >seq3 Length=78930452 Score = 187 bits (206), Expect = 3e-42 Identities = 220/298 (74%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| |||| ||| || ||||| || || || || || |||||||||||| || Sbjct 40184876 AGAGTAAGGCAGGTTTCTCCTGAGATCTTCCCAGAGCCAAAGGTATTGAAGAGGCACTTG 40184935 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || ||||| || |||| |||||||||||| || || | |||||||| ||| || Sbjct 40184936 TAACATCCTTCATCTTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATTGAGTTCC 40184995 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || | ||||||||| || |||||||| || || || | | Sbjct 40184996 AGCTGGGTGATGTTTATCTTGTCCTGATAAGGAGGCTGGACTACAACCCCATGTTTATTG 40185055 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||||||||| ||||||| || ||||| ||||| | || ||||| || || |||| Sbjct 40185056 CTGAAGGTGACCATGTTTTCTGGGCTACCAGCCTTGACTTTTTGCCATGTCACAATCAAC 40185115 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTC 168450 || || ||| | || | ||||| ||||| | ||||| || |||||||| || |||| Sbjct 40185116 ACTTCCTTAGCAGTTTTTAGGGAGCATCTTAAAGAAGCAGGTGTGTTCAGTAGCTCTC 40185173 Score = 122 bits (134), Expect = 1e-22 Identities = 162/223 (73%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | |||||| ||||| |||| || || |||| || |||||||| || Sbjct 40182467 GTTTGCTTGAAGTCCGTCACAGTCCCCAGGTGCAGCACCTGACAGGTCACCTCT---TTC 40182523 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || |||||||| |||||||| | || | | ||| || ||| || ||||||||| Sbjct 40182524 CCCACCTGACTCTTGGGATCTTTGATATGGAGGACGCTGGTGACAGACGTGGTTCCATTG 40182583 Query 168003 CGATGT---AAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAAT 168059 | ||| |||| | | || ||||||||||||||||| |||| ||||||||| | Sbjct 40182584 AGGTGTGGTAAAA---TCTCAGTACTGTTCTCAATCCCTGACCCTGTGACCTTCCAGGAG 40182640 Query 168060 ATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || ||||| || || || || | |||||||| || ||||||| Sbjct 40182641 ATCACAGGTGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTA 40182683 >seq23 Length=36106517 Score = 113 bits (124), Expect = 5e-20 Identities = 200/291 (69%), Gaps = 3/291 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || |||||| || ||||| |||| ||| || Sbjct 11639186 GTCAAACTTGTTGGCCAACAGGTGATG---GTTCTGAAGCATCCAATGCAGGTCCCCAAC 11639242 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | ||||| || || ||| | ||| |||||| | || | || || || Sbjct 11639243 CCCATAAATACAGACAGACCGCTGGTGGATGCCAGAGCAAGGTGCATAAGGTGCCCCCTT 11639302 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || ||||| ||||||||||||||| | ||||| || | |||||| || Sbjct 11639303 ACTAACTTCTCCTTCCATGTACTGCCACTTCACCAGCCTGGTGATGGAAGCCATGTCTGA 11639362 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | ||| | ||| | ||||||| | || || | | || ||||| ||||| Sbjct 11639363 GATGTGAAACTTGGAGTGGTGGGGAACAGAGCCAGGCATCCATGGTGCCCGCTGAAGGGT 11639422 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAA 160387 ||||||||||||||||| |||||||| |||||||| | |||||| ||||| Sbjct 11639423 AGCCCACAGGTGTTCGTCAGGGCTGTAGGTGTCCTTTGCCCATTCAATGAA 11639473 >seq65 Length=680646 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892 |||||||| ||||||||||||||||| |||| |||||| |||||||| | |||||||| Sbjct 210082 TCCGCCTTGCGGTCCACGTGCACGCAGTACACGTTCTGGGGCGCGTACACGGCCCTGAAG 210141 Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952 | || |||||| | | | | | || | ||| || | |||||| | ||| || || Sbjct 210142 AGCCGCTCGAAGGTGCCGAAGTCCTTGTGCACCACCATGGCGTAGGCCAGCGGGAAGGCG 210201 Query 160953 GTCTCCTCG 160961 | ||||||| Sbjct 210202 GCCTCCTCG 210210 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892 |||||||| ||||||||||||||||| |||| |||||| |||||||| | |||||||| Sbjct 217357 TCCGCCTTGCGGTCCACGTGCACGCAGTACACGTTCTGGGGCGCGTACACGGCCCTGAAG 217416 Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952 | || |||||| | | | | | || | ||| || | |||||| | ||| || || Sbjct 217417 AGCCGCTCGAAGGTGCCGAAGTCCTTGTGCACCACCATGGCGTAGGCCAGCGGGAAGGCG 217476 Query 160953 GTCTCCTCG 160961 | ||||||| Sbjct 217477 GCCTCCTCG 217485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892 |||||||| ||||||||||||||||| |||| |||||| |||||||| | |||||||| Sbjct 230885 TCCGCCTTGCGGTCCACGTGCACGCAGTACACGTTCTGGGGCGCGTACACGGCCCTGAAG 230944 Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952 | || |||||| | | | | | || | ||| || | |||||| | ||| || || Sbjct 230945 AGCCGCTCGAAGGTGCCGAAGTCCTTGTGCACCACCATGGCGTAGGCCAGCGGGAAGGCG 231004 Query 160953 GTCTCCTCG 160961 | ||||||| Sbjct 231005 GCCTCCTCG 231013 >seq1 Length=89887394 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 176211 TTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTA 176270 |||||| | || ||| | ||||| ||| ||| |||| || |||| |||||| | Sbjct 42924959 TTGTTTTTGTCAAGTTCCTTCAGATACTTTGCTAATTCACTGGGAGAGTTATAATCTTCC 42924900 Query 176271 ACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAA 176330 || || || |||| | || |||||| || || ||||| |||| || || || || | | Sbjct 42924899 ACGTGAATGAATGAATCTGCTGGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGA 42924840 Query 176331 ACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTG 176390 || | ||||| | | || || | |||| |||||||| |||||| || || Sbjct 42924839 ACAACAGGTACAGAGCCAGCCCGGAAAGCATTATAGAGCTTTTCTGTGATGTAATCTTTG 42924780 Query 176391 TGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 || ||||||||||| |||| | ||| || || || Sbjct 42924779 TGGATTGAGTTTTCGAAAGAAAGATAAAATTTGCA 42924745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577204480910400