Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq6 345 5e-90
seq3 187 3e-42
seq23 113 5e-20
seq65 89.7 6e-13
seq1 82.4 9e-11
>seq6
Length=67462845
Score = 345 bits (382), Expect = 5e-90
Identities = 668/984 (68%), Gaps = 9/984 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
||||||||| |||| |||||||| ||| || | ||| | ||| ||| || ||||| ||
Sbjct 33399620 CAGATGTTCATCCAAACATTGGATGGCAAAGAGGTCGATGTCCGTGTCAAACTTATTGGC 33399679
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| |||||| ||| | || | ||||| || ||| || | ||||| || || ||
Sbjct 33399680 AAACAAGTGGTGAACGTGC---AGCAACCAGTTCAAGTCCCCTGCTCCGAAAACACACAC 33399736
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||||| | ||| || || ||||| |||||||| | || || || | | |||||||||
Sbjct 33399737 AGAACGCAGGTGGACCCCATTGCAGGGCGGGTAGGGGGCACCCTTGGAAATGTCACCTTC 33399796
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| ||||||||||| || || |||||||| || |||| || ||||
Sbjct 33399797 AAAGTACTGCCACTTGACAAACCTGGCGATTGCATGCATGTCAGACATGTCATACTTGTG 33399856
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | | | | || || || | || || | ||| | |||||||| |||| |||
Sbjct 33399857 GCTTAAAGACAGTGACCCTGGCACTTCAGGGATCCTCTGAATAGTGGCCCAGAGGTATTC 33399916
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||| |||||||| | ||| || ||||| | |||| | | ||
Sbjct 33399917 ATCTGGGCTGTATGTGTCCTTTGCCCACTCTATGAATTTCTGGATTTTTTCATTCTTGAG 33399976
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|||| | || || || | || ||||| || || ||||| || || | | | |
Sbjct 33399977 TACGTAATCCACATACTGCCTACTGACTACAAAATAGGCACTGCCTGAAAACAGAGCTGT 33400036
Query 160472 GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC 160531
| |||||| | |||||| |||||||| | || | ||| | || |
Sbjct 33400037 TTCCAGAGGCGGGGGCATTTTGTCAGTCCCGGTGTTTGTCAGCTTTCCATCAACGACTAT 33400096
Query 160532 GTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTT 160591
|| |||| |||||||| | | || | || |||||| | |||||| ||||| ||||
Sbjct 33400097 ATGATGCTTTTTCCACCTTTCTTTTTTATTCGCTGGCATTCTTTCCGTTTCTAGGTTGTT 33400156
Query 160592 GGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTC 160651
|||| | ||||| || | | |||| || || || || || || | ||||| ||
Sbjct 33400157 TTCACCCATTAATGATTTGAGTTTCCTGACAATTTCCAGATTGGTTTTAATAGGAAAATC 33400216
Query 160652 GGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCAT 160711
| || || | || |||| ||||||||| || || ||| | || |||||| |||
Sbjct 33400217 CATGCCACAAAGATTGATCAGGTACTTCCAGTTTGCATTCATGCTGTAGAGGTCCTGCAT 33400276
Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771
||| || | || ||||| || || ||||| || || ||||| || ||||| | | |||
Sbjct 33400277 GCAGTTGAGGTCAGCCTGAACACGACTCCACGATGCATACACCACATTCTCCAACTGACT 33400336
Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCA---CCGCCAGAAAGAACAT 160828
||| |||||||||||| |||||| || | || |||| || | |||| |||| |
Sbjct 33400337 GGCTACAAAGACGTTACTGAAACAGGATGCAATGCCCATCACTGCAGCCAAAAAGGA--- 33400393
Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888
|| || | ||| ||||||||| | |||||| | ||||||||| ||||| || |
Sbjct 33400394 CTCCTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATAGCTCG 33400453
Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948
|| | ||| || | ||| || || || ||||| | || ||||| || ||||| || ||
Sbjct 33400454 CAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACTACTATAGAATATGCTATTGGGAA 33400513
Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008
||| | || || | ||| || | || | ||| | || ||||||| || ||
Sbjct 33400514 CTCTGCTTCTTCTCTACTAAGAGGTTCGACAATGTATCTGCGATTCTTGATGAATGAAGT 33400573
Query 161009 ACAATCCCGCGTCATGTTGATATA 161032
|||||||| |||||||| |||||
Sbjct 33400574 ACAATCCCTGGTCATGTTTATATA 33400597
>seq3
Length=78930452
Score = 187 bits (206), Expect = 3e-42
Identities = 220/298 (74%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
||||| | ||| |||| ||| || ||||| || || || || || |||||||||||| ||
Sbjct 40184876 AGAGTAAGGCAGGTTTCTCCTGAGATCTTCCCAGAGCCAAAGGTATTGAAGAGGCACTTG 40184935
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || ||||| || |||| |||||||||||| || || | |||||||| ||| ||
Sbjct 40184936 TAACATCCTTCATCTTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATTGAGTTCC 40184995
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || ||||| | || | ||||||||| || |||||||| || || || | |
Sbjct 40184996 AGCTGGGTGATGTTTATCTTGTCCTGATAAGGAGGCTGGACTACAACCCCATGTTTATTG 40185055
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
||||||||| ||||||| || ||||| ||||| | || ||||| || || ||||
Sbjct 40185056 CTGAAGGTGACCATGTTTTCTGGGCTACCAGCCTTGACTTTTTGCCATGTCACAATCAAC 40185115
Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTC 168450
|| || ||| | || | ||||| ||||| | ||||| || |||||||| || ||||
Sbjct 40185116 ACTTCCTTAGCAGTTTTTAGGGAGCATCTTAAAGAAGCAGGTGTGTTCAGTAGCTCTC 40185173
Score = 122 bits (134), Expect = 1e-22
Identities = 162/223 (73%), Gaps = 9/223 (4%)
Strand=Plus/Plus
Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942
|||||| | |||||| ||||| |||| || || |||| || |||||||| ||
Sbjct 40182467 GTTTGCTTGAAGTCCGTCACAGTCCCCAGGTGCAGCACCTGACAGGTCACCTCT---TTC 40182523
Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002
|| || |||||||| |||||||| | || | | ||| || ||| || |||||||||
Sbjct 40182524 CCCACCTGACTCTTGGGATCTTTGATATGGAGGACGCTGGTGACAGACGTGGTTCCATTG 40182583
Query 168003 CGATGT---AAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAAT 168059
| ||| |||| | | || ||||||||||||||||| |||| ||||||||| |
Sbjct 40182584 AGGTGTGGTAAAA---TCTCAGTACTGTTCTCAATCCCTGACCCTGTGACCTTCCAGGAG 40182640
Query 168060 ATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
|| ||||| || || || || | |||||||| || |||||||
Sbjct 40182641 ATCACAGGTGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTA 40182683
>seq23
Length=36106517
Score = 113 bits (124), Expect = 5e-20
Identities = 200/291 (69%), Gaps = 3/291 (1%)
Strand=Plus/Plus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
||| || || || || ||||| || || |||||| || ||||| |||| ||| ||
Sbjct 11639186 GTCAAACTTGTTGGCCAACAGGTGATG---GTTCTGAAGCATCCAATGCAGGTCCCCAAC 11639242
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
||| | | ||||| || || ||| | ||| |||||| | || | || || ||
Sbjct 11639243 CCCATAAATACAGACAGACCGCTGGTGGATGCCAGAGCAAGGTGCATAAGGTGCCCCCTT 11639302
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
|| || ||||| ||||||||||||||| | ||||| || | |||||| ||
Sbjct 11639303 ACTAACTTCTCCTTCCATGTACTGCCACTTCACCAGCCTGGTGATGGAAGCCATGTCTGA 11639362
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
| ||| | ||| | ||||||| | || || | | || ||||| |||||
Sbjct 11639363 GATGTGAAACTTGGAGTGGTGGGGAACAGAGCCAGGCATCCATGGTGCCCGCTGAAGGGT 11639422
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAA 160387
||||||||||||||||| |||||||| |||||||| | |||||| |||||
Sbjct 11639423 AGCCCACAGGTGTTCGTCAGGGCTGTAGGTGTCCTTTGCCCATTCAATGAA 11639473
>seq65
Length=680646
Score = 89.7 bits (98), Expect = 6e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892
|||||||| ||||||||||||||||| |||| |||||| |||||||| | ||||||||
Sbjct 210082 TCCGCCTTGCGGTCCACGTGCACGCAGTACACGTTCTGGGGCGCGTACACGGCCCTGAAG 210141
Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952
| || |||||| | | | | | || | ||| || | |||||| | ||| || ||
Sbjct 210142 AGCCGCTCGAAGGTGCCGAAGTCCTTGTGCACCACCATGGCGTAGGCCAGCGGGAAGGCG 210201
Query 160953 GTCTCCTCG 160961
| |||||||
Sbjct 210202 GCCTCCTCG 210210
Score = 89.7 bits (98), Expect = 6e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892
|||||||| ||||||||||||||||| |||| |||||| |||||||| | ||||||||
Sbjct 217357 TCCGCCTTGCGGTCCACGTGCACGCAGTACACGTTCTGGGGCGCGTACACGGCCCTGAAG 217416
Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952
| || |||||| | | | | | || | ||| || | |||||| | ||| || ||
Sbjct 217417 AGCCGCTCGAAGGTGCCGAAGTCCTTGTGCACCACCATGGCGTAGGCCAGCGGGAAGGCG 217476
Query 160953 GTCTCCTCG 160961
| |||||||
Sbjct 217477 GCCTCCTCG 217485
Score = 89.7 bits (98), Expect = 6e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 160833 TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGC 160892
|||||||| ||||||||||||||||| |||| |||||| |||||||| | ||||||||
Sbjct 230885 TCCGCCTTGCGGTCCACGTGCACGCAGTACACGTTCTGGGGCGCGTACACGGCCCTGAAG 230944
Query 160893 AACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCG 160952
| || |||||| | | | | | || | ||| || | |||||| | ||| || ||
Sbjct 230945 AGCCGCTCGAAGGTGCCGAAGTCCTTGTGCACCACCATGGCGTAGGCCAGCGGGAAGGCG 231004
Query 160953 GTCTCCTCG 160961
| |||||||
Sbjct 231005 GCCTCCTCG 231013
>seq1
Length=89887394
Score = 82.4 bits (90), Expect = 9e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 176211 TTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTA 176270
|||||| | || ||| | ||||| ||| ||| |||| || |||| |||||| |
Sbjct 42924959 TTGTTTTTGTCAAGTTCCTTCAGATACTTTGCTAATTCACTGGGAGAGTTATAATCTTCC 42924900
Query 176271 ACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAA 176330
|| || || |||| | || |||||| || || ||||| |||| || || || || | |
Sbjct 42924899 ACGTGAATGAATGAATCTGCTGGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAGA 42924840
Query 176331 ACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTG 176390
|| | ||||| | | || || | |||| |||||||| |||||| || ||
Sbjct 42924839 ACAACAGGTACAGAGCCAGCCCGGAAAGCATTATAGAGCTTTTCTGTGATGTAATCTTTG 42924780
Query 176391 TGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425
|| ||||||||||| |||| | ||| || || ||
Sbjct 42924779 TGGATTGAGTTTTCGAAAGAAAGATAAAATTTGCA 42924745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577204480910400
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