Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq26 179 5e-39 seq63 176 6e-38 seq62 176 6e-38 seq48 176 6e-38 seq37 145 9e-29 seq19 96.9 4e-14 seq42 93.3 5e-13 >seq26 Length=31570685 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 1255751 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 1255692 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||||| | ||||||| |||| | Sbjct 1255691 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAGA 1255632 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1255631 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1255572 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1255571 GCACCTGCTTCAGCACCTTGTA 1255550 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 1283821 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 1283762 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| ||||||| | ||||||| |||| | Sbjct 1283761 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAGA 1283702 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1283701 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1283642 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1283641 GCACCTGCTTCAGCACCTTGTA 1283620 >seq63 Length=771133 Score = 176 bits (194), Expect = 6e-38 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 203774 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 203833 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 203834 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 203893 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 203894 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 203953 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 203954 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 203990 >seq62 Length=786776 Score = 176 bits (194), Expect = 6e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||| | ||| |||| || Sbjct 150290 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCCCGCGACGTGA 150231 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| ||| |||||| || ||||||| |||| | Sbjct 150230 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCTGGCGATGCGCTCGAAGA 150171 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 150170 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 150111 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||||||||||||| Sbjct 150110 GCACCTGCTTGAGCACCTTGTA 150089 >seq48 Length=2645340 Score = 176 bits (194), Expect = 6e-38 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2401413 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2401472 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2401473 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2401532 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2401533 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2401592 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 2401593 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2401629 Score = 176 bits (194), Expect = 6e-38 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2445590 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2445531 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2445530 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2445471 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2445470 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2445411 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 2445410 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2445374 Score = 176 bits (194), Expect = 6e-38 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2449435 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2449494 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2449495 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2449554 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2449555 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2449614 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 2449615 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2449651 Score = 176 bits (194), Expect = 6e-38 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2502737 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2502678 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2502677 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2502618 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2502617 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2502558 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||||||| ||||||||||| | | || |||||| Sbjct 2502557 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2502521 Score = 140 bits (154), Expect = 4e-27 Identities = 151/200 (76%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2477300 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2477359 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2477360 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2477419 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | | ||||| | |||||||| Sbjct 2477420 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCC---TTGGA------CGAGTCGGGGT 2477470 Query 1254523 GCACCTGCTTGAGCACCTTG 1254542 |||||||||| ||||||||| Sbjct 2477471 GCACCTGCTTCAGCACCTTG 2477490 Score = 120 bits (132), Expect = 4e-21 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2134179 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2134120 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2134119 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2134060 Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486 |||||||||| ||||||||||||| Sbjct 2134059 TGTCGTTGACGAACGAGTTCATGA 2134036 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| || Sbjct 2560287 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2560228 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 2560227 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2560168 Query 1254463 TGTCGTTGACAAAC 1254476 |||||||||| ||| Sbjct 2560167 TGTCGTTGACGAAC 2560154 >seq37 Length=11010498 Score = 145 bits (160), Expect = 9e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| | | || Sbjct 10128136 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCTCTGGAAGTGA 10128195 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || || ||||| |||||||||| ||| |||||| ||||||| |||| | Sbjct 10128196 TGGTCGAACGTTTGTTGTAGTGCGCCAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAGA 10128255 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 10128256 TGTCGGTGACGAAGGAGTTCATGATACTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 10128315 Query 1254523 GCACCTGCTTGAGCACCTTGTAGAT 1254547 |||||||||| |||||||| || || Sbjct 10128316 GCACCTGCTTTAGCACCTTATAAAT 10128340 >seq19 Length=42003366 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || | | ||| | ||||| || ||| ||||||||||| |||| || Sbjct 1727688 GCTTGGCCAGCTCTCTGGGCAGCAGCAGGCTCATGGCCGTCTGGATCTCCCGCGACGTGA 1727629 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGA--TGCGGTCGAT 1254460 | || | ||||||| |||||||||| || ||||| |||| ||| || | Sbjct 1727628 TGGTCGAGTGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCAC--CCGAAATGCACTCAAA 1727571 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||| |||||| ||| ||||||||| | | |||| |||||||| || ||| Sbjct 1727570 GATGTTGTTGACGAACAAGTTCATGATGCCTGTGGCCTTGGACGAGATGCCAGTGTTGGG 1727511 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 ||||||||| || ||||||||||| Sbjct 1727510 GTGCACCTGATTCAGCACCTTGTA 1727487 >seq42 Length=6319095 Score = 93.3 bits (102), Expect = 5e-13 Identities = 141/193 (73%), Gaps = 12/193 (6%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCG-TGCCG 1254401 || ||||||| |||||| ||| | |||||||| ||| ||||||| || || | || | Sbjct 4453111 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCATGGCCGTCTGGACTTCTCGGGATGTC- 4453169 Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGC---GCCAGACGGCCGGCCTCGGT-GCC-GATGCGGT 1254456 | ||| | || | ||||| | ||||| ||| | ||||||| ||| | ||| | Sbjct 4453170 AGGGTGGTTCG---GCCCGAGTACTGGGCCAGCCGGGCCGCCTCGGCCGCCAGCTGC--T 4453224 Query 1254457 CGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGT 1254516 ||| || |||||| |||||||||||||||| ||| | | || |||||||| | || Sbjct 4453225 CGAACACGTCGTTCACAAACGAGTTCATGATGCTCATGGCCCTGGACGAGATGCCGATGT 4453284 Query 1254517 CGGGGTGCACCTG 1254529 ||||||||||||| Sbjct 4453285 CGGGGTGCACCTG 4453297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106971788046680