Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq26 179 5e-39
seq63 176 6e-38
seq62 176 6e-38
seq48 176 6e-38
seq37 145 9e-29
seq19 96.9 4e-14
seq42 93.3 5e-13
>seq26
Length=31570685
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 1255751 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 1255692
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| ||| ||||||| | ||||||| |||| |
Sbjct 1255691 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAGA 1255632
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1255631 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1255572
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1255571 GCACCTGCTTCAGCACCTTGTA 1255550
Score = 179 bits (198), Expect = 5e-39
Identities = 161/202 (80%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 1283821 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 1283762
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| ||| ||||||| | ||||||| |||| |
Sbjct 1283761 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAGA 1283702
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 1283701 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1283642
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 1283641 GCACCTGCTTCAGCACCTTGTA 1283620
>seq63
Length=771133
Score = 176 bits (194), Expect = 6e-38
Identities = 169/217 (78%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 203774 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 203833
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 203834 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 203893
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 203894 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 203953
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 203954 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 203990
>seq62
Length=786776
Score = 176 bits (194), Expect = 6e-38
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||| | ||| |||| ||
Sbjct 150290 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGCACCTCCCGCGACGTGA 150231
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| ||| |||||| || ||||||| |||| |
Sbjct 150230 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGGGAAGCCTCGCTGGCGATGCGCTCGAAGA 150171
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 150170 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 150111
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||||||||||||||||
Sbjct 150110 GCACCTGCTTGAGCACCTTGTA 150089
>seq48
Length=2645340
Score = 176 bits (194), Expect = 6e-38
Identities = 169/217 (78%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 2401413 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2401472
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 2401473 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2401532
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 2401533 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2401592
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 2401593 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2401629
Score = 176 bits (194), Expect = 6e-38
Identities = 169/217 (78%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 2445590 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2445531
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 2445530 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2445471
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 2445470 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2445411
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 2445410 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2445374
Score = 176 bits (194), Expect = 6e-38
Identities = 169/217 (78%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 2449435 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2449494
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 2449495 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2449554
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 2449555 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2449614
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 2449615 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2449651
Score = 176 bits (194), Expect = 6e-38
Identities = 169/217 (78%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 2502737 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2502678
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 2502677 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2502618
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 2502617 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 2502558
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||||||||| ||||||||||| | | || ||||||
Sbjct 2502557 GCACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 2502521
Score = 140 bits (154), Expect = 4e-27
Identities = 151/200 (76%), Gaps = 9/200 (5%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 2477300 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2477359
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 2477360 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2477419
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| ||||||||||||| ||| | | ||||| | ||||||||
Sbjct 2477420 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCC---TTGGA------CGAGTCGGGGT 2477470
Query 1254523 GCACCTGCTTGAGCACCTTG 1254542
|||||||||| |||||||||
Sbjct 2477471 GCACCTGCTTCAGCACCTTG 2477490
Score = 120 bits (132), Expect = 4e-21
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 2134179 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2134120
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 2134119 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2134060
Query 1254463 TGTCGTTGACAAACGAGTTCATGA 1254486
|||||||||| |||||||||||||
Sbjct 2134059 TGTCGTTGACGAACGAGTTCATGA 2134036
Score = 102 bits (112), Expect = 1e-15
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| ||
Sbjct 2560287 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGACGTGA 2560228
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 2560227 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 2560168
Query 1254463 TGTCGTTGACAAAC 1254476
|||||||||| |||
Sbjct 2560167 TGTCGTTGACGAAC 2560154
>seq37
Length=11010498
Score = 145 bits (160), Expect = 9e-29
Identities = 155/205 (76%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||| ||||||||||| | | ||
Sbjct 10128136 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCTCTGGAAGTGA 10128195
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || || ||||| |||||||||| ||| |||||| ||||||| |||| |
Sbjct 10128196 TGGTCGAACGTTTGTTGTAGTGCGCCAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAGA 10128255
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||| |||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 10128256 TGTCGGTGACGAAGGAGTTCATGATACTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 10128315
Query 1254523 GCACCTGCTTGAGCACCTTGTAGAT 1254547
|||||||||| |||||||| || ||
Sbjct 10128316 GCACCTGCTTTAGCACCTTATAAAT 10128340
>seq19
Length=42003366
Score = 96.9 bits (106), Expect = 4e-14
Identities = 145/204 (71%), Gaps = 4/204 (2%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || | | ||| | ||||| || ||| ||||||||||| |||| ||
Sbjct 1727688 GCTTGGCCAGCTCTCTGGGCAGCAGCAGGCTCATGGCCGTCTGGATCTCCCGCGACGTGA 1727629
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGA--TGCGGTCGAT 1254460
| || | ||||||| |||||||||| || ||||| |||| ||| || |
Sbjct 1727628 TGGTCGAGTGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCAC--CCGAAATGCACTCAAA 1727571
Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520
|||| |||||| ||| ||||||||| | | |||| |||||||| || |||
Sbjct 1727570 GATGTTGTTGACGAACAAGTTCATGATGCCTGTGGCCTTGGACGAGATGCCAGTGTTGGG 1727511
Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544
||||||||| || |||||||||||
Sbjct 1727510 GTGCACCTGATTCAGCACCTTGTA 1727487
>seq42
Length=6319095
Score = 93.3 bits (102), Expect = 5e-13
Identities = 141/193 (73%), Gaps = 12/193 (6%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCG-TGCCG 1254401
|| ||||||| |||||| ||| | |||||||| ||| ||||||| || || | || |
Sbjct 4453111 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCATGGCCGTCTGGACTTCTCGGGATGTC- 4453169
Query 1254402 ATCGTGTTGCGCTTGTTCGAGTGC---GCCAGACGGCCGGCCTCGGT-GCC-GATGCGGT 1254456
| ||| | || | ||||| | ||||| ||| | ||||||| ||| | ||| |
Sbjct 4453170 AGGGTGGTTCG---GCCCGAGTACTGGGCCAGCCGGGCCGCCTCGGCCGCCAGCTGC--T 4453224
Query 1254457 CGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGT 1254516
||| || |||||| |||||||||||||||| ||| | | || |||||||| | ||
Sbjct 4453225 CGAACACGTCGTTCACAAACGAGTTCATGATGCTCATGGCCCTGGACGAGATGCCGATGT 4453284
Query 1254517 CGGGGTGCACCTG 1254529
|||||||||||||
Sbjct 4453285 CGGGGTGCACCTG 4453297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106971788046680
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