Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq25 116 3e-20
seq6 102 6e-16
>seq25
Length=34219090
Score = 116 bits (128), Expect = 3e-20
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 tttttATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | |||||||| | ||||||||||||||| |||||||| ||||| | |||
Sbjct 16172681 TTTTTGTCTAAGCCATACGCGATAGCAGCAGCAGTTGGCTCATTAATGATTCTTAGTACA 16172622
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||||||||| | || |||||||| ||||| || | || || || ||||||||
Sbjct 16172621 TTGAGACCAGCAATGGTCCCAGCATCTTTGGTGGCCTGACGCTGAGAGTCATTAAAATAA 16172562
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
||||| || || | || ||||
Sbjct 16172561 GCAGGTACTGTGACCACTGCAT 16172540
Score = 107 bits (118), Expect = 1e-17
Identities = 225/330 (68%), Gaps = 8/330 (2%)
Strand=Plus/Minus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|||||||| |||||||||||||||||||| | | | ||| | || || ||||||||
Sbjct 16173323 GCACCATAAGCAACAGCTTCATCAGGATTGATGCTCTTATTCAATTCCTTTCCATTGAAG 16173264
Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|||| || |||| ||| | || || ||||| | || || || || | |||||
Sbjct 16173263 AAATCCTGTAGGAGTT-TCTGAATTTTGGGGATACGGGTAGAGCCGCCCACCAGGACAAT 16173205
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAA 281954
||||| | ||| || || || || || | ||| | | |||| ||||| |||| |||
Sbjct 16173204 ATCATGGATCTGGGACTTGTCTAGCTTGGCATCACGAAGAGCTTTCTCAACTGGGTCCAA 16173145
Query 281955 G--ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 282012
| |||| | ||||||||| | | | |||||| ||| ||| | |||| | |
Sbjct 16173144 GGTACCA---CGAAACAAGTCAGCATTCAATTCTTCAAATCGAGCACGGGTAATGGAGGT 16173088
Query 282013 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072
|| | || |||||||| | | ||||||| |||||| | | || || |||||
Sbjct 16173087 ATAGAAGTCGATTCCTTCATAGAGTGAATCAATTTCAATACTGGCCTGGGTGCTGGAAGA 16173028
Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGT 282102
|| | ||| |||||||| ||||| || ||
Sbjct 16173027 GAGCGTACGCTTAGCACGCTCACAAGCAGT 16172998
>seq6
Length=67462845
Score = 102 bits (112), Expect = 6e-16
Identities = 210/307 (68%), Gaps = 18/307 (6%)
Strand=Plus/Minus
Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322
|||||||||||||| ||| |||| || ||| || ||| || ||| | ||| ||||
Sbjct 6498385 TTTCTAATTCATTTCTAGTGTCAAT-GC-GCTCCTTAAGCTTTTTGTCTTCCTCTGCAAA 6498328
Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCTTCCGCGAT 281378
| | ||| || ||| ||| || ||||||| || |||| || || | |
Sbjct 6498327 CTTCTCAGCATCATTAACCATCCTTTCAATTTCCTCAGGTGTCAGGCGATTTT----GGT 6498272
Query 281379 TATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 281435
||| ||||| || || || || |||||| ||| ||| || | || |||||
Sbjct 6498271 CATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCACTC 6498215
Query 281436 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 281495
||||||||||| |||| | ||||| ||||||||||| || |||||||| | |||
Sbjct 6498214 GCAGAATACCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGGAG 6498155
Query 281496 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 281555
|||| || || || || || ||| ||||||||| || ||| ||||| || | ||
Sbjct 6498154 CAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGATGATTGTCTTTTGTCAGGGGTC 6498095
Query 281556 GTTCACC 281562
|||||||
Sbjct 6498094 GTTCACC 6498088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740530244621040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |