Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq25 116 3e-20 seq6 102 6e-16 >seq25 Length=34219090 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 tttttATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||||| | ||||||||||||||| |||||||| ||||| | ||| Sbjct 16172681 TTTTTGTCTAAGCCATACGCGATAGCAGCAGCAGTTGGCTCATTAATGATTCTTAGTACA 16172622 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| | || |||||||| ||||| || | || || || |||||||| Sbjct 16172621 TTGAGACCAGCAATGGTCCCAGCATCTTTGGTGGCCTGACGCTGAGAGTCATTAAAATAA 16172562 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || || | || |||| Sbjct 16172561 GCAGGTACTGTGACCACTGCAT 16172540 Score = 107 bits (118), Expect = 1e-17 Identities = 225/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||||||||||||||| | | | ||| | || || |||||||| Sbjct 16173323 GCACCATAAGCAACAGCTTCATCAGGATTGATGCTCTTATTCAATTCCTTTCCATTGAAG 16173264 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | || || ||||| | || || || || | ||||| Sbjct 16173263 AAATCCTGTAGGAGTT-TCTGAATTTTGGGGATACGGGTAGAGCCGCCCACCAGGACAAT 16173205 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAA 281954 ||||| | ||| || || || || || | ||| | | |||| ||||| |||| ||| Sbjct 16173204 ATCATGGATCTGGGACTTGTCTAGCTTGGCATCACGAAGAGCTTTCTCAACTGGGTCCAA 16173145 Query 281955 G--ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 282012 | |||| | ||||||||| | | | |||||| ||| ||| | |||| | | Sbjct 16173144 GGTACCA---CGAAACAAGTCAGCATTCAATTCTTCAAATCGAGCACGGGTAATGGAGGT 16173088 Query 282013 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 || | || |||||||| | | ||||||| |||||| | | || || ||||| Sbjct 16173087 ATAGAAGTCGATTCCTTCATAGAGTGAATCAATTTCAATACTGGCCTGGGTGCTGGAAGA 16173028 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGT 282102 || | ||| |||||||| ||||| || || Sbjct 16173027 GAGCGTACGCTTAGCACGCTCACAAGCAGT 16172998 >seq6 Length=67462845 Score = 102 bits (112), Expect = 6e-16 Identities = 210/307 (68%), Gaps = 18/307 (6%) Strand=Plus/Minus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 281322 |||||||||||||| ||| |||| || ||| || ||| || ||| | ||| |||| Sbjct 6498385 TTTCTAATTCATTTCTAGTGTCAAT-GC-GCTCCTTAAGCTTTTTGTCTTCCTCTGCAAA 6498328 Query 281323 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCT----TCAGAGAATCTTCCGCGAT 281378 | | ||| || ||| ||| || ||||||| || |||| || || | | Sbjct 6498327 CTTCTCAGCATCATTAACCATCCTTTCAATTTCCTCAGGTGTCAGGCGATTTT----GGT 6498272 Query 281379 TATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 281435 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 6498271 CATTGGTAATTGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCTGTCACTC 6498215 Query 281436 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 281495 ||||||||||| |||| | ||||| ||||||||||| || |||||||| | ||| Sbjct 6498214 GCAGAATACCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGGACCCCACGGGGAG 6498155 Query 281496 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 281555 |||| || || || || || ||| ||||||||| || ||| ||||| || | || Sbjct 6498154 CAGGAGGAATTCCAGTCAGATCAAAAGTTCCCAGAAGATGATTGTCTTTTGTCAGGGGTC 6498095 Query 281556 GTTCACC 281562 ||||||| Sbjct 6498094 GTTCACC 6498088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740530244621040