Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq31 89.7 1e-12 seq7 84.2 4e-11 >seq31 Length=25890693 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| || || || ||||| | | ||| || ||||| ||||||||||||||||||||| Sbjct 2479961 TTCTGAATGTTGTAGTCAGACAAAGTTCGTCCATCTTCCAGTTGTTTTCCAGCAAAGATT 2479902 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCT 82709 |||||||| ||||| ||||| || ||| Sbjct 2479901 AGTCTTTGCTGATCAGGAGGAATACCT 2479875 >seq7 Length=65339388 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||| | || || || || || || | ||||||| || || || | |||||||||||| Sbjct 63136586 AGAATGGACTCCTTTTGAATGTTGCAGTCAGATAAAACTCATCCATTTTCTAGTTGTTTG 63136645 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT--ATCTTGAATCTTTG 82728 ||||||||||| ||||||||||| || ||| ||| ||||||| ||| || || ||| Sbjct 63136646 CCAGCAAAGATCAGTCTTTGTTGCTCATGAGAAATTTCTTCCTTGGATCGTG-ATTTTTA 63136704 Query 82729 CTTTT 82733 ||||| Sbjct 63136705 CTTTT 63136709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981801537491560