Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq6 259 6e-64 seq3 197 2e-45 >seq6 Length=67462845 Score = 259 bits (286), Expect = 6e-64 Identities = 623/939 (66%), Gaps = 9/939 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||| | ||||| | |||| || || | ||| |||| || || | ||| ||| Sbjct 33399604 CCAGAGCTTTATGCCTCAGATGTTCATCCAAACATTGGATGGCAAAGAGGTCGATGTCCG 33399663 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| || || | ||| ||| || | ||||| | Sbjct 33399664 TGTCAAACTTATTGGCAAACAAGTGGTGAACGTGCAGCAA---CCAGTTCAAGTCCCCTG 33399720 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || |||| ||| || || |||| ||||| || |||| || | Sbjct 33399721 CTCCGAAAACACACACAGAACGCAGGTGGACCCCATTGCAGGGCGGGTAGGGGGCACCCT 33399780 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || ||||| | ||| || |||||||| | Sbjct 33399781 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCGATTGCATGCATGTCAG 33399840 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||||| | | | || | || || || | || | ||||| | || Sbjct 33399841 ACATGTCATACTTGTGGCTTAAAGACAGTGACCCTGGCACTTCAGGGATCCTCTGAATAG 33399900 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| |||| ||| ||||| || || || ||||| | |||||| ||||| | | || Sbjct 33399901 TGGCCCAGAGGTATTCATCTGGGCTGTATGTGTCCTTTGCCCACTCTATGAATTTCTGGA 33399960 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | || | |||| || || ||| | || | ||| || || || | Sbjct 33399961 TTTTTTCATTCTTGAGTACGTAATCCACATACTGCCTACTGACTACAAAATAGGCACTGC 33400020 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| | | | | ||| |||||| |||||| || ||||| | | Sbjct 33400021 CTGAAAACAGAGCTGTTTCCAGAGGCGGGGGCATTTTGTCAGTCCCGGTGTTTGTCAGCT 33400080 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| || ||||| | || ||| ||||||| | | ||| | | | | || Sbjct 33400081 TTCCATCAACGACTATATGATGCTTTTTCCACCTTTCTTTTTTATTCGCTGGCATTCTTT 33400140 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| |||| || | || || | | || || || ||||||| Sbjct 33400141 CCGTTTCTAGGTTGTTTTCACCCATTAATGATTTGAGTTTCCTGACAATTTCCAGATTGG 33400200 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || |||| || ||||| || | || ||||| || | | | | Sbjct 33400201 TTTTAATAGGAAAATCCATGCCACAAAGATTGATCAGGTACTTCCAGTTTGCATTCATGC 33400260 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || ||||||||||| || ||||| | Sbjct 33400261 TGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACACGACTCCACGATGCATACACCA 33400320 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835 | |||||||| | |||| |||||||| || |||||| || | || ||||||| Sbjct 33400321 CATTCTCCAACTGACTGGCTACAAAGACGTTACTGAAACAGGATGCAATGCCCATCACTG 33400380 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 | |||| || || || || | ||| | || ||||| | ||| || | |||||||| Sbjct 33400381 CAGCCAAAAAGGAC-TC--CTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAG 33400437 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | ||||| || | ||| | || || | ||| || || || || || || || |||| Sbjct 33400438 GCATATAGATAGCTCGCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACTACTATAG 33400497 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 |||| ||||| |||||||| || || || | ||| |||| Sbjct 33400498 AATATGCTATTGGGAACTCTGCTTCTTCTCTACTAAGAG 33400536 >seq3 Length=78930452 Score = 197 bits (218), Expect = 2e-45 Identities = 237/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || ||||| | || || || || || || ||||| ||||| || | | Sbjct 40184871 CAGAGAGAGTAAGGCAGGTTTCTCCTGAGATCTTCCCAGAGCCAAAGGTATTGAAGAGGC 40184930 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| ||||| || |||| |||||| ||||| || || | || || || ||| Sbjct 40184931 ACTTGTAACATCCTTCATCTTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATTGA 40184990 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 || | || || || ||||| | | ||||| || ||||||||||| ||||| || || | Sbjct 40184991 GTTCCAGCTGGGTGATGTTTATCTTGTCCTGATAAGGAGGCTGGACTACAACCCCATGTT 40185050 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||||| ||| |||||||||| ||||| |||||| | || ||||| || || | Sbjct 40185051 TATTGCTGAAGGTGACCATGTTTTCTGGGCTACCAGCCTTGACTTTTTGCCATGTCACAA 40185110 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| || | |||| || |||||||||||||||||||||||||||| || | Sbjct 40185111 TCAACACTTCCTTAGCAGTTTTTAGGGAGCATCTTAAAGAAGCAGGTGTGTTCAGTAGCT 40185170 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | |||| | || || ||||| Sbjct 40185171 CTCTTTTATTTTCGGTGACCAC 40185192 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || ||||| ||| ||| || |||||||||| ||| | || | || ||||||| | Sbjct 40182464 ACGGTTTGCTTGAAGTCCGTCACAGTCCCCAGGTGCAGCACCTGACAGGTCACCTCTT-- 40182521 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||||| || |||||||| | || || | ||| || ||||| || || || Sbjct 40182522 -TCCCCACCTGACTCTTGGGATCTTTGATATGGAGGACGCTGGTGACAGACGTGGTTCCA 40182580 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| | | | | |||||| || || || || || || | || ||||| | Sbjct 40182581 TTGAGGTGTGGTAAAATCTCAGTACTGTTCTCAATCCCTGACCCTGTGACCTTCCAGGAG 40182640 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || ||||| ||||| | ||| | ||||||||||| || |||| Sbjct 40182641 ATCACAGGTGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTA 40182683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578417249984000