Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq6 259 6e-64
seq3 197 2e-45
>seq6
Length=67462845
Score = 259 bits (286), Expect = 6e-64
Identities = 623/939 (66%), Gaps = 9/939 (1%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||| | ||||| | |||| || || | ||| |||| || || | ||| |||
Sbjct 33399604 CCAGAGCTTTATGCCTCAGATGTTCATCCAAACATTGGATGGCAAAGAGGTCGATGTCCG 33399663
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || |||| ||| || || | ||| ||| || | ||||| |
Sbjct 33399664 TGTCAAACTTATTGGCAAACAAGTGGTGAACGTGCAGCAA---CCAGTTCAAGTCCCCTG 33399720
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| || ||||| || |||| ||| || || |||| ||||| || |||| || |
Sbjct 33399721 CTCCGAAAACACACACAGAACGCAGGTGGACCCCATTGCAGGGCGGGTAGGGGGCACCCT 33399780
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| | || || || |||| |||||||| || ||||| | ||| || |||||||| |
Sbjct 33399781 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCGATTGCATGCATGTCAG 33399840
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| |||| ||||||| | | | || | || || || | || | ||||| | ||
Sbjct 33399841 ACATGTCATACTTGTGGCTTAAAGACAGTGACCCTGGCACTTCAGGGATCCTCTGAATAG 33399900
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| |||| ||| ||||| || || || ||||| | |||||| ||||| | | ||
Sbjct 33399901 TGGCCCAGAGGTATTCATCTGGGCTGTATGTGTCCTTTGCCCACTCTATGAATTTCTGGA 33399960
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| || | || | |||| || || ||| | || | ||| || || || |
Sbjct 33399961 TTTTTTCATTCTTGAGTACGTAATCCACATACTGCCTACTGACTACAAAATAGGCACTGC 33400020
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
| ||||||| | | | | ||| |||||| |||||| || ||||| | |
Sbjct 33400021 CTGAAAACAGAGCTGTTTCCAGAGGCGGGGGCATTTTGTCAGTCCCGGTGTTTGTCAGCT 33400080
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598
|||| || ||||| | || ||| ||||||| | | ||| | | | | ||
Sbjct 33400081 TTCCATCAACGACTATATGATGCTTTTTCCACCTTTCTTTTTTATTCGCTGGCATTCTTT 33400140
Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658
| || ||||| |||| |||| || | || || | | || || || |||||||
Sbjct 33400141 CCGTTTCTAGGTTGTTTTCACCCATTAATGATTTGAGTTTCCTGACAATTTCCAGATTGG 33400200
Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718
| |||| ||||| || |||| || ||||| || | || ||||| || | | | |
Sbjct 33400201 TTTTAATAGGAAAATCCATGCCACAAAGATTGATCAGGTACTTCCAGTTTGCATTCATGC 33400260
Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778
||| || ||||| | ||||| || || ||||| || ||||||||||| || ||||| |
Sbjct 33400261 TGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACACGACTCCACGATGCATACACCA 33400320
Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA--- 162835
| |||||||| | |||| |||||||| || |||||| || | || |||||||
Sbjct 33400321 CATTCTCCAACTGACTGGCTACAAAGACGTTACTGAAACAGGATGCAATGCCCATCACTG 33400380
Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895
| |||| || || || || | ||| | || ||||| | ||| || | ||||||||
Sbjct 33400381 CAGCCAAAAAGGAC-TC--CTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAG 33400437
Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955
| ||||| || | ||| | || || | ||| || || || || || || || ||||
Sbjct 33400438 GCATATAGATAGCTCGCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACTACTATAG 33400497
Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
|||| ||||| |||||||| || || || | ||| ||||
Sbjct 33400498 AATATGCTATTGGGAACTCTGCTTCTTCTCTACTAAGAG 33400536
>seq3
Length=78930452
Score = 197 bits (218), Expect = 2e-45
Identities = 237/322 (74%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || ||||| | || || || || || || ||||| ||||| || | |
Sbjct 40184871 CAGAGAGAGTAAGGCAGGTTTCTCCTGAGATCTTCCCAGAGCCAAAGGTATTGAAGAGGC 40184930
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| ||||| || |||| |||||| ||||| || || | || || || |||
Sbjct 40184931 ACTTGTAACATCCTTCATCTTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATTGA 40184990
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|| | || || || ||||| | | ||||| || ||||||||||| ||||| || || |
Sbjct 40184991 GTTCCAGCTGGGTGATGTTTATCTTGTCCTGATAAGGAGGCTGGACTACAACCCCATGTT 40185050
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
| | |||||| ||| |||||||||| ||||| |||||| | || ||||| || || |
Sbjct 40185051 TATTGCTGAAGGTGACCATGTTTTCTGGGCTACCAGCCTTGACTTTTTGCCATGTCACAA 40185110
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| || ||||| || | |||| || |||||||||||||||||||||||||||| || |
Sbjct 40185111 TCAACACTTCCTTAGCAGTTTTTAGGGAGCATCTTAAAGAAGCAGGTGTGTTCAGTAGCT 40185170
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| |||| | || || |||||
Sbjct 40185171 CTCTTTTATTTTCGGTGACCAC 40185192
Score = 98.7 bits (108), Expect = 1e-15
Identities = 156/223 (70%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|| ||||| ||| ||| || |||||||||| ||| | || | || ||||||| |
Sbjct 40182464 ACGGTTTGCTTGAAGTCCGTCACAGTCCCCAGGTGCAGCACCTGACAGGTCACCTCTT-- 40182521
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| ||||| || |||||||| | || || | ||| || ||||| || || ||
Sbjct 40182522 -TCCCCACCTGACTCTTGGGATCTTTGATATGGAGGACGCTGGTGACAGACGTGGTTCCA 40182580
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
|| | ||| | | | | |||||| || || || || || || | || ||||| |
Sbjct 40182581 TTGAGGTGTGGTAAAATCTCAGTACTGTTCTCAATCCCTGACCCTGTGACCTTCCAGGAG 40182640
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725
|| ||||| ||||| | ||| | ||||||||||| || ||||
Sbjct 40182641 ATCACAGGTGCTGGGCGGGCATTGGCAGAGCAAGTGATATTTA 40182683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578417249984000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |