Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq23 259 6e-64 seq3 244 1e-59 seq16 149 7e-31 seq18 141 1e-28 seq4 127 2e-24 >seq23 Length=36106517 Score = 259 bits (286), Expect = 6e-64 Identities = 457/666 (69%), Gaps = 0/666 (0%) Strand=Plus/Plus Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967 ||||| | ||| || ||||| | ||| || ||||| | ||| || || |||| || || Sbjct 32444329 AGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGT 32444388 Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027 ||||| || || ||||| |||||||| | ||| || | |||| |||||||||| |||||| Sbjct 32444389 ACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAG 32444448 Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087 ||||| || |||||||| || |||||||||||||| || |||||||||| |||||||| Sbjct 32444449 CTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAG 32444508 Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 |||||||| || | |||| || |||||||| || ||||| || || | ||||| Sbjct 32444509 GAGAGCTCACCATTCACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATC 32444568 Query 147148 GCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTC 147207 || || || || ||||| || | | | | | ||| || ||||| | Sbjct 32444569 AGAGGAAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCATCTGGGTTGGTT 32444628 Query 147208 TTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCG 147267 || || ||||| || |||||| || || || || || || | || | Sbjct 32444629 TTGATTGTGTCGATCACTTTTTGCAGCTGATCTACTCCTTGACCTGAATAATCTGAATCT 32444688 Query 147268 CAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCG 147327 || ||| |||||||| || | |||||| ||||| || || || || | || Sbjct 32444689 TTATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCT 32444748 Query 147328 CCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCC 147387 || | ||||| ||||| ||| | | | ||| || |||| || | ||| ||| Sbjct 32444749 CCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCC 32444808 Query 147388 CAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAG 147447 || || ||| || |||| || || || |||| | ||||| ||| ||| ||||| Sbjct 32444809 CAAATTTTCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACCAC 32444868 Query 147448 AGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGG 147507 | |||||| |||||||| || |||| || || | ||||| |||||||| || || | Sbjct 32444869 AACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCA 32444928 Query 147508 TCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTG 147567 || ||||| || | |||||| || ||||| ||||| ||||| |||||||| | | Sbjct 32444929 TCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGG 32444988 Query 147568 TCCTCC 147573 |||||| Sbjct 32444989 TCCTCC 32444994 >seq3 Length=78930452 Score = 244 bits (270), Expect = 1e-59 Identities = 246/320 (77%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||| ||| | || | || | ||| |||||||| || || || | | ||||||||| Sbjct 40185192 GTGGTCACCGAAAATAAAAGAGAGCTACTGAACACACCTGCTTCTTTAAGATGCTCCCTA 40185133 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 | ||| || |||| ||| ||||||| || ||||| ||| ||||| | | ||||| Sbjct 40185132 AAAACTGCTAAGGAAGTGTTGATTGTGACATGGCAAAAAGTCAAGGCTGGTAGCCCAGAA 40185073 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| | || ||||| || |||||||| ||||| |||||||| Sbjct 40185072 AACATGGTCACCTTCAGCAATAAACATGGGGTTGTAGTCCAGCCTCCTTATCAGGACAAG 40185013 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| | |||| | ||||||||||| || || |||||||||||| | Sbjct 40185012 ATAAACATCACCCAGCTGGAACTCAATAACTCAACCATTACCTTCTGGAATACCACCCTG 40184953 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || || || || ||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 40184952 GAAGATGAAGGATGTTACAAGTGCCTCTTCAATACCTTTGGCTCTGGGAAGATCTCAGGA 40184893 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 | ||||||| || ||||| Sbjct 40184892 GAAACCTGCCTTACTCTCTC 40184873 Score = 199 bits (220), Expect = 5e-46 Identities = 213/282 (76%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || | ||| || |||||||||||| | |||||||| || |||| Sbjct 40182734 TCCCAGTACAGCCCACAGTATCTCTTCACTATAAATTTTTTCAAGACCACCTAAATATCA 40182675 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| ||||| ||| | |||||| | | ||||||| | Sbjct 40182674 CTTGCTCTGCCAATGCCCGCCCAGCACCTGTGATCTCCTGGAAGGTCACAGGGTCAGGGA 40182615 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| ||||||| ||| || | | || |||||||| || ||||| ||||| || | Sbjct 40182614 TTGAGAACAGTACTGAGATTTTACCACACCTCAATGGAACCACGTCTGTCACCAGCGTCC 40182555 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| | ||||| |||||||||||| |||| || ||||| | ||| || ||| ||||| Sbjct 40182554 TCCATATCAAAGATCCCAAGAGTCAGGTGGGGAAAGAGGTGACCTGTCAGGTGCTGCACC 40182495 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| || |||| | | |||| || | ||| |||| Sbjct 40182494 TGGGGACTGTGACGGACTTCAAGCAAACCGTGAACAAAGGTA 40182453 >seq16 Length=47638275 Score = 149 bits (164), Expect = 7e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| |||||||| | ||| || | |||| |||||||||| ||||||||||| || ||||| Sbjct 10752368 CTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAA 10752427 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| || ||||||||||| |||||||| |||||||| || | Sbjct 10752428 GGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATT 10752487 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| || ||||| || || | ||||| Sbjct 10752488 CACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCAT 10752532 >seq18 Length=42608043 Score = 141 bits (156), Expect = 1e-28 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||| ||||||||||||| |||||||||||||| ||||||| Sbjct 42005975 AGGGTTACCTGGGTTGCCAAGCCCTGTCAGAGATGATCCAGTTTTACTTGGACGAGGTGA 42005916 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| |||| |||| || | ||||||||||| |||| Sbjct 42005915 TGCCGCAGGCTGAGAACCACA------------GCCCAGATGTCAAGGAGCATGTGAACT 42005868 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| || |||| || |||| ||||| || ||| Sbjct 42005867 CCCTGGGTGAGAAGCTGCAGTCCCTCAGGCTGAGACTGCGACGCTGT 42005821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||| ||||| || || |||||||||| Sbjct 42003913 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAATTTGACATCTTCATTAACTACA 42003854 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 |||||| ||||||||||| || |||| Sbjct 42003853 TAGAAGTTTACATGACAAAGAAGATGA 42003827 >seq4 Length=72800252 Score = 127 bits (140), Expect = 2e-24 Identities = 207/297 (70%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||||||||| || | |||| || ||||||| ||||||| |||| |||||||| Sbjct 63323742 GTACTCTCTGGTATTCATCATTGGCCTGGTTGGCAACATCCTGGTGGTCCTGGTCCTCAT 63323801 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | | ||||||||||||| | |||||||| ||||| ||| | || |||||| || ||| Sbjct 63323802 ACAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTGAATCTGGCCATTTCTGA 63323861 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGG-- 8786 |||||| | | ||||| || ||||| |||||| ||| | | | || |||||| Sbjct 63323862 CCTGCTCTTCCTCTTCACACTGCCCTTCTGGATTGACTACAAGGTGAAGGATAACTGGGT 63323921 Query 8787 TGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846 | |||| || |||||||||||| | ||| || | || ||| | Sbjct 63323922 TTTTGGGGATGC---------CATGTGTAAGTTCCTCTCGGGGCTGTATGACTTGGGCTT 63323972 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 |||||| || || | || |||||| || |||| | |||||||| || || |||| Sbjct 63323973 GTACAGTGAGATCTTTTTCATCATCTTGCTGACCGTTGACAGGTACCTGGCCATTGT 63324029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255 ||| || ||||||||| |||| ||||| | | |||| | || |||| || ||||| Sbjct 63295386 GCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTTTTTATTTTCTGGACACCTTACAAT 63295327 Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAGCGCG 9314 | | ||| | | ||| |||||||| | | |||| || || |||| || || Sbjct 63295326 CTGATTCTCCTACTTTCCACTTACCAAGACATCTTCTTTGAGGACA-ACTGCGA---GCA 63295271 Query 9315 GCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTG 9371 | ||| | |||| ||||| | |||| ||||| ||||||||| ||| || ||||| Sbjct 63295270 GAGCAAACAGCTGGATCTGGCCTTGCAGGTGACTGAGGTGATCGCCTACACACATTGCTG 63295211 Query 9372 CGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||||| || ||||| || |||||||| || | ||||| Sbjct 63295210 CGTCAACCCGGTGATCTATGCCTTTGTGGGAGAGAGGTTCC 63295170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583473121056000