Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq23 259 6e-64
seq3 244 1e-59
seq16 149 7e-31
seq18 141 1e-28
seq4 127 2e-24
>seq23
Length=36106517
Score = 259 bits (286), Expect = 6e-64
Identities = 457/666 (69%), Gaps = 0/666 (0%)
Strand=Plus/Plus
Query 146908 AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGC 146967
||||| | ||| || ||||| | ||| || ||||| | ||| || || |||| || ||
Sbjct 32444329 AGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGT 32444388
Query 146968 ACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAG 147027
||||| || || ||||| |||||||| | ||| || | |||| |||||||||| ||||||
Sbjct 32444389 ACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAG 32444448
Query 147028 CTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCAC 147087
||||| || |||||||| || |||||||||||||| || |||||||||| ||||||||
Sbjct 32444449 CTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAG 32444508
Query 147088 GAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147
|||||||| || | |||| || |||||||| || ||||| || || | |||||
Sbjct 32444509 GAGAGCTCACCATTCACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATC 32444568
Query 147148 GCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTC 147207
|| || || || ||||| || | | | | | ||| || ||||| |
Sbjct 32444569 AGAGGAAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTCATCTGGGTTGGTT 32444628
Query 147208 TTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCG 147267
|| || ||||| || |||||| || || || || || || | || |
Sbjct 32444629 TTGATTGTGTCGATCACTTTTTGCAGCTGATCTACTCCTTGACCTGAATAATCTGAATCT 32444688
Query 147268 CAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCG 147327
|| ||| |||||||| || | |||||| ||||| || || || || | ||
Sbjct 32444689 TTATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCT 32444748
Query 147328 CCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCC 147387
|| | ||||| ||||| ||| | | | ||| || |||| || | ||| |||
Sbjct 32444749 CCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCC 32444808
Query 147388 CAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAG 147447
|| || ||| || |||| || || || |||| | ||||| ||| ||| |||||
Sbjct 32444809 CAAATTTTCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACCAC 32444868
Query 147448 AGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGG 147507
| |||||| |||||||| || |||| || || | ||||| |||||||| || || |
Sbjct 32444869 AACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCA 32444928
Query 147508 TCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTG 147567
|| ||||| || | |||||| || ||||| ||||| ||||| |||||||| | |
Sbjct 32444929 TCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGG 32444988
Query 147568 TCCTCC 147573
||||||
Sbjct 32444989 TCCTCC 32444994
>seq3
Length=78930452
Score = 244 bits (270), Expect = 1e-59
Identities = 246/320 (77%), Gaps = 0/320 (0%)
Strand=Plus/Minus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||||| ||| | || | || | ||| |||||||| || || || | | |||||||||
Sbjct 40185192 GTGGTCACCGAAAATAAAAGAGAGCTACTGAACACACCTGCTTCTTTAAGATGCTCCCTA 40185133
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
| ||| || |||| ||| ||||||| || ||||| ||| ||||| | | |||||
Sbjct 40185132 AAAACTGCTAAGGAAGTGTTGATTGTGACATGGCAAAAAGTCAAGGCTGGTAGCCCAGAA 40185073
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || || ||||| | || ||||| || |||||||| ||||| ||||||||
Sbjct 40185072 AACATGGTCACCTTCAGCAATAAACATGGGGTTGTAGTCCAGCCTCCTTATCAGGACAAG 40185013
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
||||||||||||||||| | |||| | ||||||||||| || || |||||||||||| |
Sbjct 40185012 ATAAACATCACCCAGCTGGAACTCAATAACTCAACCATTACCTTCTGGAATACCACCCTG 40184953
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
|| || || || || ||||| |||||||| || |||||||| |||||||| ||||| ||
Sbjct 40184952 GAAGATGAAGGATGTTACAAGTGCCTCTTCAATACCTTTGGCTCTGGGAAGATCTCAGGA 40184893
Query 171372 GTGGCCTGCCTCACCCTCTC 171391
| ||||||| || |||||
Sbjct 40184892 GAAACCTGCCTTACTCTCTC 40184873
Score = 199 bits (220), Expect = 5e-46
Identities = 213/282 (76%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447
|| | || |||||||| || | ||| || |||||||||||| | |||||||| || ||||
Sbjct 40182734 TCCCAGTACAGCCCACAGTATCTCTTCACTATAAATTTTTTCAAGACCACCTAAATATCA 40182675
Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507
| || ||||||||||||||||| ||||| ||| | |||||| | | ||||||| |
Sbjct 40182674 CTTGCTCTGCCAATGCCCGCCCAGCACCTGTGATCTCCTGGAAGGTCACAGGGTCAGGGA 40182615
Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567
|||| ||||||| ||| || | | || |||||||| || ||||| ||||| || |
Sbjct 40182614 TTGAGAACAGTACTGAGATTTTACCACACCTCAATGGAACCACGTCTGTCACCAGCGTCC 40182555
Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627
|||| | ||||| |||||||||||| |||| || ||||| | ||| || ||| |||||
Sbjct 40182554 TCCATATCAAAGATCCCAAGAGTCAGGTGGGGAAAGAGGTGACCTGTCAGGTGCTGCACC 40182495
Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
|||| | ||| || |||| | | |||| || | ||| ||||
Sbjct 40182494 TGGGGACTGTGACGGACTTCAAGCAAACCGTGAACAAAGGTA 40182453
>seq16
Length=47638275
Score = 149 bits (164), Expect = 7e-31
Identities = 132/165 (80%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| |||||||| | ||| || | |||| |||||||||| ||||||||||| || |||||
Sbjct 10752368 CTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAA 10752427
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || |||||||||||||| || ||||||||||| |||||||| |||||||| || |
Sbjct 10752428 GGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATT 10752487
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
|||| || |||||||| || ||||| || || | |||||
Sbjct 10752488 CACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCAT 10752532
>seq18
Length=42608043
Score = 141 bits (156), Expect = 1e-28
Identities = 130/167 (78%), Gaps = 12/167 (7%)
Strand=Plus/Minus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| ||| ||||||||||||| |||||||||||||| |||||||
Sbjct 42005975 AGGGTTACCTGGGTTGCCAAGCCCTGTCAGAGATGATCCAGTTTTACTTGGACGAGGTGA 42005916
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| |||| |||| || | ||||||||||| ||||
Sbjct 42005915 TGCCGCAGGCTGAGAACCACA------------GCCCAGATGTCAAGGAGCATGTGAACT 42005868
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| ||||| || ||||| || |||| || |||| ||||| || |||
Sbjct 42005867 CCCTGGGTGAGAAGCTGCAGTCCCTCAGGCTGAGACTGCGACGCTGT 42005821
Score = 95.1 bits (104), Expect = 1e-14
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || || |||||||| |||||||| ||||| || || ||||||||||
Sbjct 42003913 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAATTTGACATCTTCATTAACTACA 42003854
Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548
|||||| ||||||||||| || ||||
Sbjct 42003853 TAGAAGTTTACATGACAAAGAAGATGA 42003827
>seq4
Length=72800252
Score = 127 bits (140), Expect = 2e-24
Identities = 207/297 (70%), Gaps = 12/297 (4%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||||||||| || | |||| || ||||||| ||||||| |||| ||||||||
Sbjct 63323742 GTACTCTCTGGTATTCATCATTGGCCTGGTTGGCAACATCCTGGTGGTCCTGGTCCTCAT 63323801
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
| | ||||||||||||| | |||||||| ||||| ||| | || |||||| || |||
Sbjct 63323802 ACAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTGAATCTGGCCATTTCTGA 63323861
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACTGG-- 8786
|||||| | | ||||| || ||||| |||||| ||| | | | || ||||||
Sbjct 63323862 CCTGCTCTTCCTCTTCACACTGCCCTTCTGGATTGACTACAAGGTGAAGGATAACTGGGT 63323921
Query 8787 TGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846
| |||| || |||||||||||| | ||| || | || ||| |
Sbjct 63323922 TTTTGGGGATGC---------CATGTGTAAGTTCCTCTCGGGGCTGTATGACTTGGGCTT 63323972
Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903
|||||| || || | || |||||| || |||| | |||||||| || || ||||
Sbjct 63323973 GTACAGTGAGATCTTTTTCATCATCTTGCTGACCGTTGACAGGTACCTGGCCATTGT 63324029
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/221 (71%), Gaps = 8/221 (4%)
Strand=Plus/Minus
Query 9196 GCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAAC 9255
||| || ||||||||| |||| ||||| | | |||| | || |||| || |||||
Sbjct 63295386 GCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTTTTTATTTTCTGGACACCTTACAAT 63295327
Query 9256 GTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAGCGCG 9314
| | ||| | | ||| |||||||| | | |||| || || |||| || ||
Sbjct 63295326 CTGATTCTCCTACTTTCCACTTACCAAGACATCTTCTTTGAGGACA-ACTGCGA---GCA 63295271
Query 9315 GCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTG 9371
| ||| | |||| ||||| | |||| ||||| ||||||||| ||| || |||||
Sbjct 63295270 GAGCAAACAGCTGGATCTGGCCTTGCAGGTGACTGAGGTGATCGCCTACACACATTGCTG 63295211
Query 9372 CGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
||||||||| || ||||| || |||||||| || | |||||
Sbjct 63295210 CGTCAACCCGGTGATCTATGCCTTTGTGGGAGAGAGGTTCC 63295170
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583473121056000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |