Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_027016.1
Length=226084
Score E
Sequences producing significant alignments: (Bits) Value
seq24 105 1e-17
seq6 89.7 7e-13
>seq24
Length=35080050
Score = 105 bits (116), Expect = 1e-17
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055
|||| ||||| || ||||| || |||||||| ||||| || | | || ||| | |
Sbjct 28548884 AGATAATTGATGGAGAAGTGTATCCTCCTACAGTCAAAGACACTCAGGTCTCCATGATCT 28548825
Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115
|| ||| || || ||| | | || || || |||| | ||| | ||||| | |
Sbjct 28548824 ACCCACCTCAAGTCCCTGAACACCTGCGCTTTGCTGTGGGGCAGGAGGTCTTTGGCATGG 28548765
Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175
|||| || | ||| |||| |||| ||||||||| | || || ||||| || || || |
Sbjct 28548764 TGCCTGGCCTGATGATGTATGCCACCATCTGGCTGCGGGAACATAACAGAGTGTGTGATG 28548705
Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223
|||||||||| || || || |||||| ||| || ||| | |||||||
Sbjct 28548704 TGCTGAAACAGGAACATCCAGAATGGGGCGATGAGCAGTTATTCCAGA 28548657
>seq6
Length=67462845
Score = 89.7 bits (98), Expect = 7e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151
|||| | ||| |||| || || | || || ||||| ||||||||| ||||||||
Sbjct 8562138 TGGGCCAGGAGGTGTTCGGGCTGCTCCCGGGGCTCATGCTGTACGCCACGCTCTGGCTGC 8562079
Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211
||||||||||| | || || ||| |||||||| |||||||| ||| | |||||||
Sbjct 8562078 GAGAGCACAACCGTGTGTGTGACCTGCTGAAAGCGGAGCACCCTACCTGGGAGGACGAAC 8562019
Query 214212 AGCTGTTCCAGA 214223
| || |||||||
Sbjct 8562018 AACTCTTCCAGA 8562007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723322354809600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |