Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq24 105 1e-17 seq6 89.7 7e-13 >seq24 Length=35080050 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||||| || ||||| || |||||||| ||||| || | | || ||| | | Sbjct 28548884 AGATAATTGATGGAGAAGTGTATCCTCCTACAGTCAAAGACACTCAGGTCTCCATGATCT 28548825 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115 || ||| || || ||| | | || || || |||| | ||| | ||||| | | Sbjct 28548824 ACCCACCTCAAGTCCCTGAACACCTGCGCTTTGCTGTGGGGCAGGAGGTCTTTGGCATGG 28548765 Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175 |||| || | ||| |||| |||| ||||||||| | || || ||||| || || || | Sbjct 28548764 TGCCTGGCCTGATGATGTATGCCACCATCTGGCTGCGGGAACATAACAGAGTGTGTGATG 28548705 Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||||||||| || || || |||||| ||| || ||| | ||||||| Sbjct 28548704 TGCTGAAACAGGAACATCCAGAATGGGGCGATGAGCAGTTATTCCAGA 28548657 >seq6 Length=67462845 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| |||| || || | || || ||||| ||||||||| |||||||| Sbjct 8562138 TGGGCCAGGAGGTGTTCGGGCTGCTCCCGGGGCTCATGCTGTACGCCACGCTCTGGCTGC 8562079 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 ||||||||||| | || || ||| |||||||| |||||||| ||| | ||||||| Sbjct 8562078 GAGAGCACAACCGTGTGTGTGACCTGCTGAAAGCGGAGCACCCTACCTGGGAGGACGAAC 8562019 Query 214212 AGCTGTTCCAGA 214223 | || ||||||| Sbjct 8562018 AACTCTTCCAGA 8562007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723322354809600