Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9 125 1e-23 seq20 120 4e-22 seq15 118 1e-21 >seq9 Length=63840602 Score = 125 bits (138), Expect = 1e-23 Identities = 101/122 (83%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | || || Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||||||||| |||||||| |||||||| ||||| ||||||||||| || ||||| || Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGCT 25234433 Query 39761 AC 39762 || Sbjct 25234432 AC 25234431 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 ||| ||||| |||||||| || || |||| ||||| ||| ||||| |||||||||||| | Sbjct 25228418 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCATATATCAGG 25228359 Query 40174 ATATTGTATTGGAAAAATAACAAATC 40199 ||| || |||||||| || ||||||| Sbjct 25228358 ATACTGGATTGGAAAGATGACAAATC 25228333 >seq20 Length=39541208 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| | || || || | Sbjct 37615172 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCT 37615231 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || |||| |||||||| ||||| |||||||| ||||| ||||| || || | Sbjct 37615232 TGAGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGG 37615291 Query 39759 CAACAAGTCTCTCTCC 39774 | || | | |||||| Sbjct 37615292 CCACCACCCGCTCTCC 37615307 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || | || || |||||||| |||||||||||||| || || Sbjct 37616408 ATCTTTAATGTAGGTGTCAATGAGGAGGCTGTACATTTCGGAATGGATGTTTTCCATGGC 37616467 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || ||||| ||||| | ||||||||||| || || ||| Sbjct 37616468 GATCTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGCACTTCT 37616513 >seq15 Length=51729835 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || || ||||| || ||||| | ||| Sbjct 36813108 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAT 36813167 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 36813168 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAACTG 36813227 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 36813228 TTTCTTATACCAT 36813240 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || || || ||||| | Sbjct 36828771 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 36828830 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || |||||||||||||| | ||||| | || || ||| |||| ||||| || |||| Sbjct 36828831 GGATGGCATAGTCAGGATGCTTAGTAGTCAAGGTCGCAGCTGTTTCTGCAGCCAAAGTAT 36828890 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || | |||| || || || |||||||||| Sbjct 36828891 CTAGTTCCACAGTGGTCACCCCACTGTATAAGCCCTGGATTACTTTCATGG 36828941 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| || || || ||||| || |||||||| || ||| Sbjct 36825320 GTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 36825379 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||| |||||||| | || ||||| | |||||||| | | || | ||||||| Sbjct 36825380 TATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATTCCCACAGATACCCTCATCAAC 36825439 Query 70111 ATATGCTGAGGTCGTTC 70127 ||||| || |||| ||| Sbjct 36825440 ATATGTTGTGGTCTTTC 36825456 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| ||||||||||| ||||||| |||||||| ||||||||||| Sbjct 36820377 ATATAGCTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACA 36820436 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 36820437 CATCAAAGACCA 36820448 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || || ||||||| | | Sbjct 36820822 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAAAAGGTCTCTGGCACGTTGC 36820881 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || ||||| | || || ||||||| || Sbjct 36820882 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 36820941 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 || | || || || | | || ||||| |||| Sbjct 36820942 TCCAAGTAAATAGCAAATGCCCCAGGTCGCTTAT 36820975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891283825600