Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23 230 2e-55 seq9 102 6e-17 seq20 86.0 5e-12 >seq23 Length=36106517 Score = 230 bits (254), Expect = 2e-55 Identities = 433/637 (68%), Gaps = 0/637 (0%) Strand=Plus/Minus Query 40681 TGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAG 40740 ||||| || | ||||| |||| || || ||| | || |||||||| || |||| Sbjct 32444935 TGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAAG 32444876 Query 40741 AACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGC 40800 | ||||| ||||||||||| || | || |||||||| || | || | ||| ||| Sbjct 32444875 AGCTGTTGTGGTTTATCAAGGGATCCACAAATGCTAATGAACTGTCTTCCAAAGGTGTGA 32444816 Query 40801 ACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGG 40860 | |||||| |||| | |||| | | |||| ||| | || || | || | Sbjct 32444815 AAATTTGGGATGCCAATGGTTCCCGAGACTTTTTGGACAGCCTGGGGTTCTCCAACAGAG 32444756 Query 40861 ATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATG 40920 | ||||| ||| | || ||||||||||| ||||||| |||||||||||| ||| |||| Sbjct 32444755 AAGAAGGAGATTTAGGCCCTGTTTATGGCTTTCAGTGGCGACATTTTGGGGCAGAATACA 32444696 Query 40921 ACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980 | || | || |||||| | | ||||| | ||||| | || || || || | Sbjct 32444695 AAGATAAAGATTCAGATTATTCAGGTCAAGGAGTAGATCAGCTGCAAAAAGTGATCGACA 32444636 Query 40981 CGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040 | || ||| || | || ||| | || | || || |||| || ||||| |||| || Sbjct 32444635 CAATCAAAACCAACCCAGATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATC 32444576 Query 41041 TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTG 41100 | | | ||||||| || || || || ||| | || ||||| || || ||||||| Sbjct 32444575 TTCCTCTGATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGGTGAATGGTG 32444516 Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160 | || || || || | | || || ||||| |||||||| || || || || || || | Sbjct 32444515 AGCTCTCCTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATA 32444456 Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTG 41220 | || || || | |||||||| | |||||||| ||| | ||| | || || || | Sbjct 32444455 TTGCCAGCTACTCCCTGCTCACCTGCATGATTGCGCACATCACCGGCCTGAAGCCCGGCG 32444396 Query 41221 AATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAG 41280 | ||||| || || || ||||||| ||| |||||| | |||||||| ||||| ||| || Sbjct 32444395 ATTTTGTACATACATTGGGAGATGCACACATTTACCTGAATCACATTGAGCCTCTAAAAG 32444336 Query 41281 AACAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317 || || ||| |||| || || ||||||| ||| Sbjct 32444335 TGCAGCTTCAGCGAGAACCAAGGCCTTTTCCAAAGCT 32444299 >seq9 Length=63840602 Score = 102 bits (112), Expect = 6e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | ||| |||||||||||||| || ||||| ||||| || ||||||||| Sbjct 25234431 GTAGCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCTGCTATATTTTGG 25234490 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | |||||| ||||| | |||||||| | || ||||| ||||| | || || | ||| Sbjct 25234491 CTGAAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGAT 25234550 Query 44255 GAAG 44258 |||| Sbjct 25234551 GAAG 25234554 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || |||| ||| |||||| ||||||| ||| | |||||||| Sbjct 25228335 TTTGTCATCTTTCCAATCCAGTATCCTGATATATGGAAAATGTATAAACAGGCACAGGCA 25228394 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 25228395 TCCTTCTGGACAGCAGAAGAGGT 25228417 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 25239205 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 25239264 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| || ||| |||||||| Sbjct 25239265 AACGAGTATCAGAGTATCAGCG 25239286 >seq20 Length=39541208 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 |||||||| || ||||| ||||| || ||||| || || || || || ||||| ||||| Sbjct 37616515 CAAGAAGTGCAGATTACT-GAAGCCCGCTGTTTCTACGGCTTCCAGATCGCCATGGAAAA 37616457 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||| || || || || || ||||| |||||| Sbjct 37616456 CATCCATTCCGAAATGTACAGCCTCCTCATTGACACCTACATTAAAGAT 37616408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || | || || || || | |||||||| || ||||| || || || |||||| Sbjct 37615307 GGAGAGCGGGTGGTGGCCTTCGCGGCAGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCG 37615248 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||| || ||| | |||||||| || ||||||||||| | || ||||| ||||| | Sbjct 37615247 TCCATTTTCTGGCTCAAGAAACGCGGGTTGATGCCTGGCCTCACATTTTCCAATGAACTT 37615188 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 37615187 ATTAGCAGAGATGA 37615174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446118250200