Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq23 230 2e-55
seq9 102 6e-17
seq20 86.0 5e-12
>seq23
Length=36106517
Score = 230 bits (254), Expect = 2e-55
Identities = 433/637 (68%), Gaps = 0/637 (0%)
Strand=Plus/Minus
Query 40681 TGAGAAATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAG 40740
||||| || | ||||| |||| || || ||| | || |||||||| || ||||
Sbjct 32444935 TGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAAG 32444876
Query 40741 AACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGC 40800
| ||||| ||||||||||| || | || |||||||| || | || | ||| |||
Sbjct 32444875 AGCTGTTGTGGTTTATCAAGGGATCCACAAATGCTAATGAACTGTCTTCCAAAGGTGTGA 32444816
Query 40801 ACATTTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGG 40860
| |||||| |||| | |||| | | |||| ||| | || || | || |
Sbjct 32444815 AAATTTGGGATGCCAATGGTTCCCGAGACTTTTTGGACAGCCTGGGGTTCTCCAACAGAG 32444756
Query 40861 ATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATG 40920
| ||||| ||| | || ||||||||||| ||||||| |||||||||||| ||| ||||
Sbjct 32444755 AAGAAGGAGATTTAGGCCCTGTTTATGGCTTTCAGTGGCGACATTTTGGGGCAGAATACA 32444696
Query 40921 ACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATA 40980
| || | || |||||| | | ||||| | ||||| | || || || || |
Sbjct 32444695 AAGATAAAGATTCAGATTATTCAGGTCAAGGAGTAGATCAGCTGCAAAAAGTGATCGACA 32444636
Query 40981 CGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040
| || ||| || | || ||| | || | || || |||| || ||||| |||| ||
Sbjct 32444635 CAATCAAAACCAACCCAGATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATC 32444576
Query 41041 TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTG 41100
| | | ||||||| || || || || ||| | || ||||| || || |||||||
Sbjct 32444575 TTCCTCTGATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGGTGAATGGTG 32444516
Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160
| || || || || | | || || ||||| |||||||| || || || || || || |
Sbjct 32444515 AGCTCTCCTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATA 32444456
Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTG 41220
| || || || | |||||||| | |||||||| ||| | ||| | || || || |
Sbjct 32444455 TTGCCAGCTACTCCCTGCTCACCTGCATGATTGCGCACATCACCGGCCTGAAGCCCGGCG 32444396
Query 41221 AATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAG 41280
| ||||| || || || ||||||| ||| |||||| | |||||||| ||||| ||| ||
Sbjct 32444395 ATTTTGTACATACATTGGGAGATGCACACATTTACCTGAATCACATTGAGCCTCTAAAAG 32444336
Query 41281 AACAACTGACACGAAAACCTAGACCATTTCCAACGCT 41317
|| || ||| |||| || || ||||||| |||
Sbjct 32444335 TGCAGCTTCAGCGAGAACCAAGGCCTTTTCCAAAGCT 32444299
>seq9
Length=63840602
Score = 102 bits (112), Expect = 6e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194
|| || ||||| | ||| |||||||||||||| || ||||| ||||| || |||||||||
Sbjct 25234431 GTAGCCTTTGCTGCTGTAGAAGGCATTTTCTTCTCTGGATCATTTGCTGCTATATTTTGG 25234490
Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254
| |||||| ||||| | |||||||| | || ||||| ||||| | || || | |||
Sbjct 25234491 CTGAAGAAAAGAGGTCTCATGCCTGGACTCACTTTTTCCAATGAACTCATCAGCAGAGAT 25234550
Query 44255 GAAG 44258
||||
Sbjct 25234551 GAAG 25234554
Score = 87.8 bits (96), Expect = 1e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||| || |||| ||| |||||| ||||||| ||| | ||||||||
Sbjct 25228335 TTTGTCATCTTTCCAATCCAGTATCCTGATATATGGAAAATGTATAAACAGGCACAGGCA 25228394
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || |||||||||||||| ||
Sbjct 25228395 TCCTTCTGGACAGCAGAAGAGGT 25228417
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 25239205 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 25239264
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| || ||| ||||||||
Sbjct 25239265 AACGAGTATCAGAGTATCAGCG 25239286
>seq20
Length=39541208
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/109 (79%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
|||||||| || ||||| ||||| || ||||| || || || || || ||||| |||||
Sbjct 37616515 CAAGAAGTGCAGATTACT-GAAGCCCGCTGTTTCTACGGCTTCCAGATCGCCATGGAAAA 37616457
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| ||||||||||| || || || || || ||||| ||||||
Sbjct 37616456 CATCCATTCCGAAATGTACAGCCTCCTCATTGACACCTACATTAAAGAT 37616408
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
||||| || | || || || || | |||||||| || ||||| || || || ||||||
Sbjct 37615307 GGAGAGCGGGTGGTGGCCTTCGCGGCAGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCG 37615248
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
|||| || ||| | |||||||| || ||||||||||| | || ||||| ||||| |
Sbjct 37615247 TCCATTTTCTGGCTCAAGAAACGCGGGTTGATGCCTGGCCTCACATTTTCCAATGAACTT 37615188
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 37615187 ATTAGCAGAGATGA 37615174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397446118250200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |