Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq23 217 1e-51 >seq23 Length=36106517 Score = 217 bits (240), Expect = 1e-51 Identities = 461/682 (68%), Gaps = 7/682 (1%) Strand=Plus/Plus Query 111613 TCAAAGTCATCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTT 111672 |||||||| ||||| || || ||||| ||||| |||| ||||| || ||| Sbjct 32444245 TCAAAGTCTTCAGCTTTGAAGTCATCAATCGTCTCAACTTTTCGAAGGATTTTGAGCTTT 32444304 Query 111673 GGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAA 111732 ||||| || | || | ||| |||||| | || || ||||| |||||||| | ||| Sbjct 32444305 GGAAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAA 32444364 Query 111733 ACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCA 111792 | || |||||||| | ||| | || || | |||| || || |||||||| ||| Sbjct 32444365 ATGTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCA 32444424 Query 111793 ATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCT 111852 |||||| | ||||| || ||| || ||||| || || |||||||| |||||||| ||| Sbjct 32444425 ATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCT 32444484 Query 111853 CCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGT 111912 || || || || | |||||| || || || | | | |||||| || || |||||| Sbjct 32444485 CCTGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGGCAAAGT 32444544 Query 111913 ACATGACAAGGAGGCAATGCCATCCCATTCATAAAG---GGTCCCCATGCACACATGATC 111969 |||| || ||||| || |||||| | | | || ||| ||||||| ||| Sbjct 32444545 GCATGGCATGGAGGTAAGGCCATCAGAGGAAGATCTTTTGGATTCCAAGCACACAGGATG 32444604 Query 111970 ATCCTTCTGCTGTAGCGATTA-TGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTAT 112028 || |||||| | | || | || | ||| || || || || ||||| |||| Sbjct 32444605 ATTCTTCTGTCATCTGGGTTGGTTTTGATTGT-GTCGATCACTTTTTGCAGCTGATCTAC 32444663 Query 112029 CCCTTTACCAGTATAATCCGCCTGACATCCAGTGTATGTTGCCCCATAGTGTCTCCATTG 112088 |||| ||| | |||||| | | | ||||| ||||||| | |||| ||| || Sbjct 32444664 TCCTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTG 32444723 Query 112089 GAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGA-AATTGCTCTCTATTCA 112147 || ||||||| ||| || | |||||| || | | |||| || | || | || Sbjct 32444724 AAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGT-TGGAGAACCCCAGGCTGTCCA 32444782 Query 112148 ACAAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTG 112207 | || || | | || | || |||||| ||||| ||||| || || | || | | Sbjct 32444783 AAAAGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTAG 32444842 Query 112208 CATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTC 112267 ||||||||||||| | |||||||| | || ||||||| ||| ||||||||| | || | Sbjct 32444843 CATTTGTGGATCCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAACAC 32444902 Query 112268 TTTTAGTAGTTAGCAGTGGAAA 112289 ||| || || ||||| ||||| Sbjct 32444903 GTTTGGTTGTCAGCAGAGGAAA 32444924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391935855252520