Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq33 100 3e-16 seq17 95.1 1e-14 seq9 93.3 5e-14 seq20 84.2 2e-11 >seq33 Length=19089813 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| || |||||| ||| || || || || || Sbjct 3009909 GTGAAAATATAACGAGGGCTTGCAGCATCTTTTCCACCATGAAGTCGTGTTCCAAACTGA 3009850 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| |||||||||||||||||||| || ||| Sbjct 3009849 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTTTGAGCCAAATTCACA 3009790 Query 117425 ATCGT 117429 || || Sbjct 3009789 ATAGT 3009785 >seq17 Length=44067645 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||| ||||||||| || | || || || || Sbjct 4405311 GTGAAGATGTATCGAGGACTAGCAGAATCTTTGCCACCATGTAGTCTGGTGCCAAACTGA 4405252 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| ||||||||| || |||||||| |||| | Sbjct 4405251 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 4405192 Query 117425 ATCGT 117429 || || Sbjct 4405191 ATGGT 4405187 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | ||| |||||||| || | || |||||||| Sbjct 4405311 GTGAAGATGTATCGAGGACTAGCAGAATCTTTGCCACCATGTAGTCTGGTGCCAAACTGA 4405252 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| |||||| ||||||||||||||||| | | Sbjct 4405251 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 4405192 Query 152149 ATCGT 152153 || || Sbjct 4405191 ATGGT 4405187 >seq9 Length=63840602 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| ||||| | || |||||||| || || | |||| Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 ||| |||||| || ||| || || ||| |||||| |||||||| ||| ||||||| Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435 Query 74890 CGAC 74893 | || Sbjct 25234434 CTAC 25234431 >seq20 Length=39541208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| | || || ||||| Sbjct 37615174 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCTTG 37615233 Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || |||| | || || |||||| ||||||||| ||||| || ||| ||||| Sbjct 37615234 AGCCAGAAAATGGACGCA-AAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGGC 37615292 Query 74891 GAC 74893 || Sbjct 37615293 CAC 37615295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202045992000