Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq33 100 3e-16
seq17 95.1 1e-14
seq9 93.3 5e-14
seq20 84.2 2e-11
>seq33
Length=19089813
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| || |||||| ||| || || || || ||
Sbjct 3009909 GTGAAAATATAACGAGGGCTTGCAGCATCTTTTCCACCATGAAGTCGTGTTCCAAACTGA 3009850
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | |||||| |||||||||||||||||||| || |||
Sbjct 3009849 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTTTGAGCCAAATTCACA 3009790
Query 117425 ATCGT 117429
|| ||
Sbjct 3009789 ATAGT 3009785
>seq17
Length=44067645
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| ||| ||||||||| || | || || || ||
Sbjct 4405311 GTGAAGATGTATCGAGGACTAGCAGAATCTTTGCCACCATGTAGTCTGGTGCCAAACTGA 4405252
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| |||||||||||| || ||| ||||||||| || |||||||| |||| |
Sbjct 4405251 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 4405192
Query 117425 ATCGT 117429
|| ||
Sbjct 4405191 ATGGT 4405187
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | ||| |||||||| || | || ||||||||
Sbjct 4405311 GTGAAGATGTATCGAGGACTAGCAGAATCTTTGCCACCATGTAGTCTGGTGCCAAACTGA 4405252
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | |||||| || || ||| |||||| ||||||||||||||||| | |
Sbjct 4405251 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 4405192
Query 152149 ATCGT 152153
|| ||
Sbjct 4405191 ATGGT 4405187
>seq9
Length=63840602
Score = 93.3 bits (102), Expect = 5e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829
||||||||||||| || | |||||| ||||| | || |||||||| || || | ||||
Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495
Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889
||| |||||| || ||| || || ||| |||||| |||||||| ||| |||||||
Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435
Query 74890 CGAC 74893
| ||
Sbjct 25234434 CTAC 25234431
>seq20
Length=39541208
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/123 (76%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||| | ||||||||||| | || || |||||
Sbjct 37615174 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCTTG 37615233
Query 74832 AACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890
| ||| || |||| | || || |||||| ||||||||| ||||| || ||| |||||
Sbjct 37615234 AGCCAGAAAATGGACGCA-AAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGGC 37615292
Query 74891 GAC 74893
||
Sbjct 37615293 CAC 37615295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547202045992000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |