Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 91.5 2e-13 seq17 82.4 9e-11 >seq24 Length=35080050 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || ||||| || || || |||||||||||| | | Sbjct 30006437 AATGCAGATCTTTGTGAAGACCCTGACAGGCAAAACCATCACCCTTGAGGTTGAGCCCAG 30006378 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | ||||| ||| | || || ||||| || ||||||||||| Sbjct 30006377 TGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 30006333 >seq17 Length=44067645 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | || Sbjct 23139465 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 23139524 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGA 27500 |||| ||| | ||| |||||||||| || ||||| Sbjct 23139525 GATACCATCGAGAATGTGAAGGCTAAGATCCAGGA 23139559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570295857084800