Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq65 158 2e-33 >seq65 Length=680646 Score = 158 bits (174), Expect = 2e-33 Identities = 437/652 (67%), Gaps = 45/652 (7%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 || |||| || || || | |||||| | || ||| | ||| | | ||| | ||| Sbjct 217484 GAGGAGGCCGCCTTCCCGCTGGCCTACGCCATGGTGGTGCACAAGGACTTCGGCACCTTC 217425 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 ||||| ||| | |||||| | ||||| || |||||| | |||||||| ||||||||| | Sbjct 217424 GAGCGGCTCTTCAGGGCCGTGTACGCGCCCCAGAACGTGTACTGCGTGCACGTGGACCGC 217365 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCT--CGGCCATCGCCAGGTGCTTCCCTAACG 13860 ||| | | | ||| ||| |||| ||| |||| || | |||||||| |||| Sbjct 217364 AAGGCGGACCCCGACTTCCAGCGGGCCGTGGAGCGGCTGCTGC--GCTGCTTCCCCAACG 217307 Query 13861 TGGCCCTGGCCCACCGGCTGCACGAC---GTGGTGTACGGCTCCTGGAGTCGCG--TGCA 13915 || | ||| | || | || ||||||||||| | |||||| |||| Sbjct 217306 ---CCTTCGCCGCCTCGCGGAGGGAGCCGGTGGTGTACGGGGGT--GTGTCGCGGCTGCA 217252 Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975 ||||||||| |||| || ||||||||| | ||| |||| ||||||||| |||| Sbjct 217251 GGCCGACCTGCACTGCCTGGCGGACCTGGCGGGCTCGGCCGTGCCCTGGAGGTACGTGCT 217192 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAA 14035 |||| ||||| |||||||||||| | ||||||||||||||||||||| ||||| Sbjct 217191 CAACACCTGCGGACAGGACTTCCCGCTGAGGACCAACCTGGAGATCGTGCGCTACCTGAA 217132 Query 14036 GGCCCT---GGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAAC---CACAAGCT 14089 || ||| ||| |||| | | ||| || | | || ||||| | ||| | | Sbjct 217131 GGGCCTCCGGGGGCGCAACATCACCCCGG-----GGGTGC-TGCCCCCCGTGCACGCGGT 217078 Query 14090 GCACCGCATCAGGAAGAGGCACGTGG------TGGCCA--GCGGCGGCGT-GGTGGTCAA 14140 || | | | |||| | |||| || |||||| | ||| | | ||| || Sbjct 217077 GCCCAGGACCAGGTACGTGCACCGGGAGCACCTGGCCAAGGAGGCCTCCTACGTGATCCG 217018 Query 14141 CACCGGCAG-GAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCT-TTGCGGGAAACGCT 14198 | |||| | | |||||| || |||||| || | |||||| | ||| | || Sbjct 217017 GA-CGGCGGCGCTCAAGGCGCCTGCGCCGCACAACCTGACCATCTACTTCGGCTCA-GCG 216960 Query 14199 TACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGA--CGA-GCCGGTGGCC 14255 ||| | ||| | ||| || ||||||||||| ||||| | || ||| | | |||| | Sbjct 216959 TACGTGGCGCTGACCAGGCCCTTCGTGGACTTTGTCCTGCATGACCCGAGGGCCGTGGAC 216900 Query 14256 CTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307 |||| ||| |||| ||||||| | |||||||||||||||| | |||| Sbjct 216899 CTGC---TGCGGTGGTCGCAGGACACCTTCAGCCCCGACGAGCACTTCTGGG 216851 Score = 150 bits (166), Expect = 2e-31 Identities = 247/351 (70%), Gaps = 14/351 (4%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 || |||| || || || | |||||| | || ||| | ||| | | ||| | ||| Sbjct 210209 GAGGAGGCCGCCTTCCCGCTGGCCTACGCCATGGTGGTGCACAAGGACTTCGGCACCTTC 210150 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 ||||| ||| | |||||| | ||||| || |||||| | |||||||| ||||||||| | Sbjct 210149 GAGCGGCTCTTCAGGGCCGTGTACGCGCCCCAGAACGTGTACTGCGTGCACGTGGACCGC 210090 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCT--CGGCCATCGCCAGGTGCTTCCCTAACG 13860 ||| | | | ||| ||| |||| ||| |||| || | |||||||| |||| Sbjct 210089 AAGGCGGACCCCGACTTCCAGCGGGCCGTGGAGCGGCTGCTGC--GCTGCTTCCCCAACG 210032 Query 13861 TGGCCCTGGCCCACCGGCTGCACGA---CGTGGTGTACGGCTCCTGGAGTCGCG--TGCA 13915 || | ||| | || | || |||||||||||| | |||||| |||| Sbjct 210031 ---CCTTCGCCGCCTCGCGGAGGGAGTCCGTGGTGTACGGGGGT--GTGTCGCGGCTGCA 209977 Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975 ||||||||| |||| || ||||||||| | ||| |||| ||||||||| |||| Sbjct 209976 GGCCGACCTGCACTGCCTGGCGGACCTGGCGGGCTCGGCCGTGCCCTGGAGGTACGTGCT 209917 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 |||| ||||| |||||||||||| | ||||||||||||||||||||| Sbjct 209916 CAACACCTGCGGACAGGACTTCCCGCTGAGGACCAACCTGGAGATCGTGCG 209866 Score = 145 bits (160), Expect = 1e-29 Identities = 246/351 (70%), Gaps = 14/351 (4%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 || |||| || || || | |||||| | || ||| | ||| | | ||| | ||| Sbjct 231012 GAGGAGGCCGCCTTCCCGCTGGCCTACGCCATGGTGGTGCACAAGGACTTCGGCACCTTC 230953 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 ||||| ||| | |||||| | ||||| || |||||| | |||||||| ||||||||| | Sbjct 230952 GAGCGGCTCTTCAGGGCCGTGTACGCGCCCCAGAACGTGTACTGCGTGCACGTGGACCGC 230893 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCT--CGGCCATCGCCAGGTGCTTCCCTAACG 13860 ||| | | | ||| ||| |||| ||| |||| || | |||||||| |||| Sbjct 230892 AAGGCGGACCCCGACTTCCAGCGGGCCGTGGAGCGGCTGCTGC--GCTGCTTCCCCAACG 230835 Query 13861 TGGCCCTGGCCCACCGGCTGCACGAC---GTGGTGTACGGCTCCTGGAGTCGCG--TGCA 13915 || | ||| | || | || ||||||||||| | |||||| |||| Sbjct 230834 ---CCTTCGCCGCCTCGCGGAGGGAGCCGGTGGTGTACGGGGGT--GTGTCGCGGCTGCA 230780 Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975 ||||||||| |||| || ||||||||| | ||| |||| ||||||||| |||| Sbjct 230779 GGCCGACCTGCACTGCCTGGCGGACCTGGCGGGCTCGGCCGTGCCCTGGAGGTACGTGCT 230720 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 |||| ||||| |||||||||||| | ||||||||||||||||||||| Sbjct 230719 CAACACCTGCGGACAGGACTTCCCGCTGAGGACCAACCTGGAGATCGTGCG 230669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658722402150400