Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq65 158 2e-33
>seq65
Length=680646
Score = 158 bits (174), Expect = 2e-33
Identities = 437/652 (67%), Gaps = 45/652 (7%)
Strand=Plus/Minus
Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742
|| |||| || || || | |||||| | || ||| | ||| | | ||| | |||
Sbjct 217484 GAGGAGGCCGCCTTCCCGCTGGCCTACGCCATGGTGGTGCACAAGGACTTCGGCACCTTC 217425
Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802
||||| ||| | |||||| | ||||| || |||||| | |||||||| ||||||||| |
Sbjct 217424 GAGCGGCTCTTCAGGGCCGTGTACGCGCCCCAGAACGTGTACTGCGTGCACGTGGACCGC 217365
Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCT--CGGCCATCGCCAGGTGCTTCCCTAACG 13860
||| | | | ||| ||| |||| ||| |||| || | |||||||| ||||
Sbjct 217364 AAGGCGGACCCCGACTTCCAGCGGGCCGTGGAGCGGCTGCTGC--GCTGCTTCCCCAACG 217307
Query 13861 TGGCCCTGGCCCACCGGCTGCACGAC---GTGGTGTACGGCTCCTGGAGTCGCG--TGCA 13915
|| | ||| | || | || ||||||||||| | |||||| ||||
Sbjct 217306 ---CCTTCGCCGCCTCGCGGAGGGAGCCGGTGGTGTACGGGGGT--GTGTCGCGGCTGCA 217252
Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975
||||||||| |||| || ||||||||| | ||| |||| ||||||||| ||||
Sbjct 217251 GGCCGACCTGCACTGCCTGGCGGACCTGGCGGGCTCGGCCGTGCCCTGGAGGTACGTGCT 217192
Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAA 14035
|||| ||||| |||||||||||| | ||||||||||||||||||||| |||||
Sbjct 217191 CAACACCTGCGGACAGGACTTCCCGCTGAGGACCAACCTGGAGATCGTGCGCTACCTGAA 217132
Query 14036 GGCCCT---GGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAAC---CACAAGCT 14089
|| ||| ||| |||| | | ||| || | | || ||||| | ||| | |
Sbjct 217131 GGGCCTCCGGGGGCGCAACATCACCCCGG-----GGGTGC-TGCCCCCCGTGCACGCGGT 217078
Query 14090 GCACCGCATCAGGAAGAGGCACGTGG------TGGCCA--GCGGCGGCGT-GGTGGTCAA 14140
|| | | | |||| | |||| || |||||| | ||| | | ||| ||
Sbjct 217077 GCCCAGGACCAGGTACGTGCACCGGGAGCACCTGGCCAAGGAGGCCTCCTACGTGATCCG 217018
Query 14141 CACCGGCAG-GAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCT-TTGCGGGAAACGCT 14198
| |||| | | |||||| || |||||| || | |||||| | ||| | ||
Sbjct 217017 GA-CGGCGGCGCTCAAGGCGCCTGCGCCGCACAACCTGACCATCTACTTCGGCTCA-GCG 216960
Query 14199 TACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGA--CGA-GCCGGTGGCC 14255
||| | ||| | ||| || ||||||||||| ||||| | || ||| | | |||| |
Sbjct 216959 TACGTGGCGCTGACCAGGCCCTTCGTGGACTTTGTCCTGCATGACCCGAGGGCCGTGGAC 216900
Query 14256 CTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307
|||| ||| |||| ||||||| | |||||||||||||||| | ||||
Sbjct 216899 CTGC---TGCGGTGGTCGCAGGACACCTTCAGCCCCGACGAGCACTTCTGGG 216851
Score = 150 bits (166), Expect = 2e-31
Identities = 247/351 (70%), Gaps = 14/351 (4%)
Strand=Plus/Minus
Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742
|| |||| || || || | |||||| | || ||| | ||| | | ||| | |||
Sbjct 210209 GAGGAGGCCGCCTTCCCGCTGGCCTACGCCATGGTGGTGCACAAGGACTTCGGCACCTTC 210150
Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802
||||| ||| | |||||| | ||||| || |||||| | |||||||| ||||||||| |
Sbjct 210149 GAGCGGCTCTTCAGGGCCGTGTACGCGCCCCAGAACGTGTACTGCGTGCACGTGGACCGC 210090
Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCT--CGGCCATCGCCAGGTGCTTCCCTAACG 13860
||| | | | ||| ||| |||| ||| |||| || | |||||||| ||||
Sbjct 210089 AAGGCGGACCCCGACTTCCAGCGGGCCGTGGAGCGGCTGCTGC--GCTGCTTCCCCAACG 210032
Query 13861 TGGCCCTGGCCCACCGGCTGCACGA---CGTGGTGTACGGCTCCTGGAGTCGCG--TGCA 13915
|| | ||| | || | || |||||||||||| | |||||| ||||
Sbjct 210031 ---CCTTCGCCGCCTCGCGGAGGGAGTCCGTGGTGTACGGGGGT--GTGTCGCGGCTGCA 209977
Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975
||||||||| |||| || ||||||||| | ||| |||| ||||||||| ||||
Sbjct 209976 GGCCGACCTGCACTGCCTGGCGGACCTGGCGGGCTCGGCCGTGCCCTGGAGGTACGTGCT 209917
Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026
|||| ||||| |||||||||||| | |||||||||||||||||||||
Sbjct 209916 CAACACCTGCGGACAGGACTTCCCGCTGAGGACCAACCTGGAGATCGTGCG 209866
Score = 145 bits (160), Expect = 1e-29
Identities = 246/351 (70%), Gaps = 14/351 (4%)
Strand=Plus/Minus
Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742
|| |||| || || || | |||||| | || ||| | ||| | | ||| | |||
Sbjct 231012 GAGGAGGCCGCCTTCCCGCTGGCCTACGCCATGGTGGTGCACAAGGACTTCGGCACCTTC 230953
Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802
||||| ||| | |||||| | ||||| || |||||| | |||||||| ||||||||| |
Sbjct 230952 GAGCGGCTCTTCAGGGCCGTGTACGCGCCCCAGAACGTGTACTGCGTGCACGTGGACCGC 230893
Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCT--CGGCCATCGCCAGGTGCTTCCCTAACG 13860
||| | | | ||| ||| |||| ||| |||| || | |||||||| ||||
Sbjct 230892 AAGGCGGACCCCGACTTCCAGCGGGCCGTGGAGCGGCTGCTGC--GCTGCTTCCCCAACG 230835
Query 13861 TGGCCCTGGCCCACCGGCTGCACGAC---GTGGTGTACGGCTCCTGGAGTCGCG--TGCA 13915
|| | ||| | || | || ||||||||||| | |||||| ||||
Sbjct 230834 ---CCTTCGCCGCCTCGCGGAGGGAGCCGGTGGTGTACGGGGGT--GTGTCGCGGCTGCA 230780
Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975
||||||||| |||| || ||||||||| | ||| |||| ||||||||| ||||
Sbjct 230779 GGCCGACCTGCACTGCCTGGCGGACCTGGCGGGCTCGGCCGTGCCCTGGAGGTACGTGCT 230720
Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026
|||| ||||| |||||||||||| | |||||||||||||||||||||
Sbjct 230719 CAACACCTGCGGACAGGACTTCCCGCTGAGGACCAACCTGGAGATCGTGCG 230669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658722402150400
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