Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq23 320 1e-82
seq16 125 6e-24
seq7 91.5 1e-13
>seq23
Length=36106517
Score = 320 bits (354), Expect = 1e-82
Identities = 486/689 (71%), Gaps = 6/689 (1%)
Strand=Plus/Plus
Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899
||||| || || || || | || ||||| || || || || | || || ||||||
Sbjct 32444305 GGAAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAA 32444364
Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959
| ||| || ||||||| | || ||||| || || || | || ||||||| ||| ||
Sbjct 32444365 ATGTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCA 32444424
Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019
|||||| | ||||| || ||||||||||| || || ||||| || || || ||||||||
Sbjct 32444425 ATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCT 32444484
Query 30020 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30079
|| |||||||||| ||||| || |||||||| || | ||| || ||||| || |
Sbjct 32444485 CCTGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGGCAAAGT 32444544
Query 30080 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30136
|| ||||| ||||| | ||||| |||| ||| ||||| || ||||| || |||| |
Sbjct 32444545 GCATGGCATGGAGGTAAGGCCATCAGAGG---AAGATCTTTTGGATTCCAAGCACACAGG 32444601
Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196
||||| | ||||| ||||||||| | |||| ||| | | ||||||||||||||
Sbjct 32444602 ATGATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCT 32444661
Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256
|| || || || || |||| | || |||| ||||| || ||||| | ||||
Sbjct 32444662 ACTCCTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGCCCCAAAATGTCGCCAC 32444721
Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30316
|| || || || || || || | ||||| ||||| |||| ||| ||| |||||
Sbjct 32444722 TGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCC 32444781
Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376
|||||||||| |||||| ||||| ||||| || || || || || ||| || || ||
Sbjct 32444782 AAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTA 32444841
Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436
| |||||||| || ||| ||||||| |||||| |||| || | ||||| || ||
Sbjct 32444842 GCATTTGTGGATCCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAACA 32444901
Query 30437 CTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAAC 30496
| ||||| || || || ||||| | | | |||| ||| | ||||| || |||
Sbjct 32444902 CGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAAC 32444961
Query 30497 ACGGACAAGACTCCCGTGCCCGTCCTGTC 30525
|| |||| | || |||||||| | |||
Sbjct 32444962 ACCGACAGGGTGCCGGTGCCCGTGCGGTC 32444990
>seq16
Length=47638275
Score = 125 bits (138), Expect = 6e-24
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| ||||||| ||| || |||||| | ||||| || ||||||||||| || || |||||
Sbjct 10752372 AGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGC 10752431
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || |||||||| || ||||||||||| ||||| || |||||||| || | |
Sbjct 10752432 ACACCCAGGCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCACC 10752491
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|| || ||||| || | || ||||| ||||| | ||||| ||
Sbjct 10752492 ACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATCAG 10752535
Score = 95.1 bits (104), Expect = 1e-14
Identities = 117/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290
|||| ||||| || ||||| | |||||| || || || || || || | ||||| ||||
Sbjct 10755855 TGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTT 10755914
Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350
| |||| ||| ||| ||||||||||||||| |||||| ||||| ||||| || |
Sbjct 10755915 CTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTT 10755974
Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
| || || || ||| || || || | |||||||| ||
Sbjct 10755975 TCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCC 10756014
>seq7
Length=65339388
Score = 91.5 bits (100), Expect = 1e-13
Identities = 85/108 (79%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || || ||||| ||||| || || |||||| | | ||| | ||| || || ||
Sbjct 33161258 TTGAGTTCTCTACTGAGAACTACATTAATTCTGTCTTTTAAAGGCCGATTTTTCTCAGGA 33161199
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||||||||| |||||||| ||||||| ||||| || |||
Sbjct 33161198 ATGGAGAACCAAGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 33161151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406300298107680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |