Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq23 320 1e-82 seq16 125 6e-24 seq7 91.5 1e-13 >seq23 Length=36106517 Score = 320 bits (354), Expect = 1e-82 Identities = 486/689 (71%), Gaps = 6/689 (1%) Strand=Plus/Plus Query 29840 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAG 29899 ||||| || || || || | || ||||| || || || || | || || |||||| Sbjct 32444305 GGAAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAA 32444364 Query 29900 ACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29959 | ||| || ||||||| | || ||||| || || || | || ||||||| ||| || Sbjct 32444365 ATGTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCA 32444424 Query 29960 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 30019 |||||| | ||||| || ||||||||||| || || ||||| || || || |||||||| Sbjct 32444425 ATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCT 32444484 Query 30020 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 30079 || |||||||||| ||||| || |||||||| || | ||| || ||||| || | Sbjct 32444485 CCTGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGGCAAAGT 32444544 Query 30080 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 30136 || ||||| ||||| | ||||| |||| ||| ||||| || ||||| || |||| | Sbjct 32444545 GCATGGCATGGAGGTAAGGCCATCAGAGG---AAGATCTTTTGGATTCCAAGCACACAGG 32444601 Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196 ||||| | ||||| ||||||||| | |||| ||| | | |||||||||||||| Sbjct 32444602 ATGATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCT 32444661 Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256 || || || || || |||| | || |||| ||||| || ||||| | |||| Sbjct 32444662 ACTCCTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGCCCCAAAATGTCGCCAC 32444721 Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30316 || || || || || || || | ||||| ||||| |||| ||| ||| ||||| Sbjct 32444722 TGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCC 32444781 Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376 |||||||||| |||||| ||||| ||||| || || || || || ||| || || || Sbjct 32444782 AAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTA 32444841 Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436 | |||||||| || ||| ||||||| |||||| |||| || | ||||| || || Sbjct 32444842 GCATTTGTGGATCCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAACA 32444901 Query 30437 CTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAAC 30496 | ||||| || || || ||||| | | | |||| ||| | ||||| || ||| Sbjct 32444902 CGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAAC 32444961 Query 30497 ACGGACAAGACTCCCGTGCCCGTCCTGTC 30525 || |||| | || |||||||| | ||| Sbjct 32444962 ACCGACAGGGTGCCGGTGCCCGTGCGGTC 32444990 >seq16 Length=47638275 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || ||||||| ||| || |||||| | ||||| || ||||||||||| || || ||||| Sbjct 10752372 AGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGC 10752431 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || ||||||||||| ||||| || |||||||| || | | Sbjct 10752432 ACACCCAGGCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCACC 10752491 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | || ||||| ||||| | ||||| || Sbjct 10752492 ACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATCAG 10752535 Score = 95.1 bits (104), Expect = 1e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || ||||| | |||||| || || || || || || | ||||| |||| Sbjct 10755855 TGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTT 10755914 Query 30291 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30350 | |||| ||| ||| ||||||||||||||| |||||| ||||| ||||| || | Sbjct 10755915 CTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTT 10755974 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 | || || || ||| || || || | |||||||| || Sbjct 10755975 TCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCC 10756014 >seq7 Length=65339388 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| ||||| || || |||||| | | ||| | ||| || || || Sbjct 33161258 TTGAGTTCTCTACTGAGAACTACATTAATTCTGTCTTTTAAAGGCCGATTTTTCTCAGGA 33161199 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||||||||| |||||||| ||||||| ||||| || ||| Sbjct 33161198 ATGGAGAACCAAGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 33161151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406300298107680