Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq23 403 2e-107 seq16 129 5e-25 >seq23 Length=36106517 Score = 403 bits (446), Expect = 2e-107 Identities = 554/772 (72%), Gaps = 2/772 (0%) Strand=Plus/Plus Query 6487 TCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCG 6546 ||||| |||||||||| || || || | || ||||| || ||||| | || | Sbjct 32444286 TCGAAGGATTTTGAGCTTTGGAAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGG 32444345 Query 6547 CTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC 6606 ||| ||||| |||||||| || || ||||| ||||| ||||| || | || || || Sbjct 32444346 CTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTT 32444405 Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666 || || || || || |||||| | |||||||| | ||| || ||||| ||||| || Sbjct 32444406 CAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGG 32444465 Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726 ||| || | ||||||||||| || | || | ||||||||||| ||||| |||||| | Sbjct 32444466 CACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCAC 32444525 Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 || ||||| ||||| || | ||||| || || | ||||||||||| ||||| || || Sbjct 32444526 CACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATCAGAGGAAGATCTTTTGG 32444585 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||| || |||| | ||| ||||||||||| ||||| || | ||||||||||| Sbjct 32444586 ATTCCAAGCACACAGGATGATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCAC 32444645 Query 6847 GTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGC 6906 | |||||||| || |||| || || ||||| || | || | | || || || Sbjct 32444646 TTTTTGCAGCTGATCTACTCCTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGC 32444705 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 |||||| |||| |||||| || || || || ||||| || || || || || | | ||| Sbjct 32444706 CCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTC-TGTTGG 32444764 Query 6967 -GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025 ||||||| | |||||| ||||||||| || || | || ||||| || ||||| || Sbjct 32444765 AGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTT 32444824 Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085 ||| || || || || | || |||| ||| | | ||||||| |||||| || | | Sbjct 32444825 TGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACCACAACAGCTCTTCCAAAA 32444884 Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATC 7145 | || |||||| | |||||||| || |||||||| |||||||| | | ||| |||| | Sbjct 32444885 CACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGC 32444944 Query 7146 GGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGGTAGC 7205 | ||||| ||||||||| || ||||| || || || || |||||| |||||||| ||| Sbjct 32444945 GCGCCTGCAGGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCCTCCTTCCGGAAGC 32445004 Query 7206 CCTCCCTGAGGATCCGCGCCACCTGATACAGATACTGCCACTCCCCATGCGG 7257 | | || || || | | ||| ||| |||||| ||||||| || || Sbjct 32445005 CGCAGCGCAGAATGTGCTCGATCTGCCCCAGGTACTGCAACTCCCCGTGGGG 32445056 Score = 403 bits (446), Expect = 2e-107 Identities = 554/772 (72%), Gaps = 2/772 (0%) Strand=Plus/Minus Query 34088 CCGCATGGGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGG 34147 || || ||||||| |||||| ||| ||| | | || || || | |||| |||| Sbjct 32445056 CCCCACGGGGAGTTGCAGTACCTGGGGCAGATCGAGCACATTCTGCGCTGCGGCTTCCGG 32444997 Query 34148 AAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAAC 34207 |||| |||||| || || || || ||||| || ||||||||| ||||| || |||| | Sbjct 32444996 AAGGAGGACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCCTGCAGGCGCGCTACAGC 32444937 Query 34208 CTTCGGGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | | |||||||| |||||||| || |||||||| | |||||| || || | || Sbjct 32444936 CTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAA 32444877 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 |||||| ||||||| | | ||| |||| || | || || || || ||| || ||| Sbjct 32444876 GAGCTGTTGTGGTTTATCAAGGGATCCACAAATGCTAATGAACTGTCTTCCAAAGGTGTG 32444817 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCG 34386 || || ||||| || | || || ||||||||| |||||| | ||||||| ||| | | Sbjct 32444816 AAAATTTGGGATGCCAATGGTTCCCGAGACTTTTTGGACAGCCTGGGGTTCTCCAACA-G 32444758 Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || || || || ||||| || || || || |||||| |||| |||||||| || || Sbjct 32444757 AGAAGAAGGAGATTTAGGCCCTGTTTATGGCTTTCAGTGGCGACATTTTGGGGCAGAATA 32444698 Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGA 34506 | | || | || ||||| || || |||| || |||||||| | |||||||| Sbjct 32444697 CAAAGATAAAGATTCAGATTATTCAGGTCAAGGAGTAGATCAGCTGCAAAAAGTGATCGA 32444638 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 ||| | || ||||| ||||||||||| ||| | |||| || ||||| || || || Sbjct 32444637 CACAATCAAAACCAACCCAGATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGA 32444578 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 ||| ||||||||||| | || || ||||| | || ||||| ||||| || | |||||| Sbjct 32444577 TCTTCCTCTGATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGGTGAATGG 32444518 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||||| ||||||||||| | || | || ||||||||||| | || ||||| ||||| Sbjct 32444517 TGAGCTCTCCTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAA 32444458 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 ||||| || ||| | |||||||| | |||||| || || || || || || || Sbjct 32444457 TATTGCCAGCTACTCCCTGCTCACCTGCATGATTGCGCACATCACCGGCCTGAAGCCCGG 32444398 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806 || | || ||||| ||||| ||||| || || |||||||| ||||| |||| || Sbjct 32444397 CGATTTTGTACATACATTGGGAGATGCACACATTTACCTGAATCACATTGAGCCTCTAAA 32444338 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGA 34858 | ||||| || ||||| || | || || || |||||||||| ||||| Sbjct 32444337 AGTGCAGCTTCAGCGAGAACCAAGGCCTTTTCCAAAGCTCAAAATCCTTCGA 32444286 >seq16 Length=47638275 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||| | |||||||| | ||| || ||||| ||||| ||||| || | ||| Sbjct 10752384 TGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 10752443 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || ||||||||||| ||||| |||||| | || ||||| ||| Sbjct 10752444 ATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGG 10752503 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | ||||| || || | ||||||||||| ||||| Sbjct 10752504 CAAAGTGCATGGCATGGAGGTAAGGCCATCAGAGGAAGATC 10752544 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| | || || ||||| | || ||||| ||||| || | |||| Sbjct 10752544 GATCTTCCTCTGATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGGTGAAT 10752485 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||| ||||||||||| || || | || ||||||||||| | || ||||| ||| Sbjct 10752484 GGTGAGCTCTCCTGCCAGCTATACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTC 10752425 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || ||||| || ||| | |||||||| | |||||| || || Sbjct 10752424 AATATTGCCAGCTACTCCCTGCTCACCTGCATGATTGCGCA 10752384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448250969308800