Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq3 168 6e-37
seq23 167 2e-36
seq16 122 7e-23
>seq3
Length=78930452
Score = 168 bits (186), Expect = 6e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340
||||| | ||||| |||||||||||||| || || |||||||||||||||| |||
Sbjct 40185120 GAAGTGTTGATTGTGACATGGCAAAAAGTCAAGGCTGGTAGCCCAGAAAACATGGTCACC 40185061
Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400
|| || ||| | || |||||||| || ||||| | || | || || || ||||| ||
Sbjct 40185060 TTCAGCAATAAACATGGGGTTGTAGTCCAGCCTCCTTATCAGGACAAGATAAACATCACC 40185001
Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460
|||| | ||| | ||| |||| || ||||||||||| || || |||| ||||||||
Sbjct 40185000 CAGCTGGAACTCAATAACTCAACCATTACCTTCTGGAATACCACCCTGGAAGATGAAGGA 40184941
Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508
|| |||||||| | || || || ||||| ||||||||||| ||||||
Sbjct 40184940 TGTTACAAGTGCCTCTTCAATACCTTTGGCTCTGGGAAGATCTCAGGA 40184893
>seq23
Length=36106517
Score = 167 bits (184), Expect = 2e-36
Identities = 404/610 (66%), Gaps = 4/610 (1%)
Strand=Plus/Plus
Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515
|| || | ||| || |||||||||||||||| || | || ||||| || | |||||||
Sbjct 32444329 AGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGT 32444388
Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575
| || || || || | || || || | ||| ||||||||| | || | || ||||
Sbjct 32444389 ACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAG 32444448
Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635
||||| | ||| || || |||||||| ||||||||| |||| ||||||| | |||||
Sbjct 32444449 CTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAG 32444508
Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695
|||||||| || || | ||||| ||||| | | || |||||||| | ||||
Sbjct 32444509 GAGAGCTCACCATTCACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATC 32444568
Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG--CCTTCTGCTATATGGTTCTA 118753
| || | |||||||| || | | ||| |||||| || ||| |
Sbjct 32444569 AGAGGAAGATCTTTTGGATTCCAAGC--ACACAGGATGATTCTTCTGTCATCTGGGTTGG 32444626
Query 118754 CCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACT 118813
| || || || | || || | |||||| || || | || | ||| | || |
Sbjct 32444627 TTTTGATTGTGTCGATCACTTTTTGCAGCTGATCTACTCCTTGACCTGAATAATCTGAAT 32444686
Query 118814 CGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGAT 118873
| |||| ||||||||||||||| || ||| ||||| ||||||||||| || | ||
Sbjct 32444687 CTTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAAT 32444746
Query 118874 CTCCCTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCAT 118933
|||| | || || || | | | ||| ||| || ||||| ||||
Sbjct 32444747 CTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCAT 32444806
Query 118934 TCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACC 118993
|||||| || ||||| | ||| ||||||| ||||| || || | | |||||
Sbjct 32444807 CCCAAATTTTCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACC 32444866
Query 118994 AAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAACT 119053
| | ||||| || | ||| ||| |||| ||||| ||| ||||| | ||| ||||| |
Sbjct 32444867 ACAACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATT 32444926
Query 119054 GACCTCTAAG 119063
| |||| ||
Sbjct 32444927 CATCTCTCAG 32444936
>seq16
Length=47638275
Score = 122 bits (134), Expect = 7e-23
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 40801030 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 40800971
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 40800970 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 40800911
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 40800910 ATCGCCCTGTGGATGACCGA 40800891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414466495070560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |