Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3 168 6e-37 seq23 167 2e-36 seq16 122 7e-23 >seq3 Length=78930452 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||||||||| || || |||||||||||||||| ||| Sbjct 40185120 GAAGTGTTGATTGTGACATGGCAAAAAGTCAAGGCTGGTAGCCCAGAAAACATGGTCACC 40185061 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || ||| | || |||||||| || ||||| | || | || || || ||||| || Sbjct 40185060 TTCAGCAATAAACATGGGGTTGTAGTCCAGCCTCCTTATCAGGACAAGATAAACATCACC 40185001 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| | ||| | ||| |||| || ||||||||||| || || |||| |||||||| Sbjct 40185000 CAGCTGGAACTCAATAACTCAACCATTACCTTCTGGAATACCACCCTGGAAGATGAAGGA 40184941 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGA 1508 || |||||||| | || || || ||||| ||||||||||| |||||| Sbjct 40184940 TGTTACAAGTGCCTCTTCAATACCTTTGGCTCTGGGAAGATCTCAGGA 40184893 >seq23 Length=36106517 Score = 167 bits (184), Expect = 2e-36 Identities = 404/610 (66%), Gaps = 4/610 (1%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | ||| || |||||||||||||||| || | || ||||| || | ||||||| Sbjct 32444329 AGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGT 32444388 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || || || || | || || || | ||| ||||||||| | || | || |||| Sbjct 32444389 ACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAG 32444448 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | ||| || || |||||||| ||||||||| |||| ||||||| | ||||| Sbjct 32444449 CTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAG 32444508 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 |||||||| || || | ||||| ||||| | | || |||||||| | |||| Sbjct 32444509 GAGAGCTCACCATTCACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATC 32444568 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG--CCTTCTGCTATATGGTTCTA 118753 | || | |||||||| || | | ||| |||||| || ||| | Sbjct 32444569 AGAGGAAGATCTTTTGGATTCCAAGC--ACACAGGATGATTCTTCTGTCATCTGGGTTGG 32444626 Query 118754 CCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGACT 118813 | || || || | || || | |||||| || || | || | ||| | || | Sbjct 32444627 TTTTGATTGTGTCGATCACTTTTTGCAGCTGATCTACTCCTTGACCTGAATAATCTGAAT 32444686 Query 118814 CGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGAT 118873 | |||| ||||||||||||||| || ||| ||||| ||||||||||| || | || Sbjct 32444687 CTTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAAT 32444746 Query 118874 CTCCCTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCAT 118933 |||| | || || || | | | ||| ||| || ||||| |||| Sbjct 32444747 CTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCAT 32444806 Query 118934 TCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACC 118993 |||||| || ||||| | ||| ||||||| ||||| || || | | ||||| Sbjct 32444807 CCCAAATTTTCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACC 32444866 Query 118994 AAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAACT 119053 | | ||||| || | ||| ||| |||| ||||| ||| ||||| | ||| ||||| | Sbjct 32444867 ACAACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATT 32444926 Query 119054 GACCTCTAAG 119063 | |||| || Sbjct 32444927 CATCTCTCAG 32444936 >seq16 Length=47638275 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 40801030 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 40800971 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 40800970 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 40800911 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 40800910 ATCGCCCTGTGGATGACCGA 40800891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414466495070560