Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq9 129 5e-25
>seq9
Length=63840602
Score = 129 bits (142), Expect = 5e-25
Identities = 103/124 (83%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
|||| |||||||| || ||||| || ||||| || | ||| ||||| | |||||| || |
Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| |||||||||||||| |||||||| ||||| ||||| ||||||||||| || ||||| |
Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435
Query 4690 CTAC 4693
||||
Sbjct 25234434 CTAC 25234431
Score = 89.7 bits (98), Expect = 4e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || |||||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 25239283 TGATACTCTGATACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 25239224
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 25239223 ATAAAATCAAAGGGATT 25239207
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| || || || || ||||||||||||||||| || || |
Sbjct 25231289 AAAATCTT---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 25231233
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| ||||| |||| || || | ||||| || ||||| || || | ||| || |
Sbjct 25231232 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAATGAGGAAGATCCTTTG 25231173
Query 5041 TTAAATCAAC 5050
||| |||||
Sbjct 25231172 ATAAGTCAAC 25231163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427038982479320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |