Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq23 318 4e-82
seq16 125 5e-24
>seq23
Length=36106517
Score = 318 bits (352), Expect = 4e-82
Identities = 488/690 (71%), Gaps = 8/690 (1%)
Strand=Plus/Plus
Query 27106 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAG 27165
||||| || || || || | || ||||| || || || || | ||||| ||||||
Sbjct 32444305 GGAAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAA 32444364
Query 27166 ACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 27225
| ||| || ||||||| || || ||||| || || || | || ||||||| ||| ||
Sbjct 32444365 ATGTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCA 32444424
Query 27226 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCC 27285
|||||| | ||||| || ||||||||||| || || ||||| || || || ||||||||
Sbjct 32444425 ATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCT 32444484
Query 27286 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATG 27345
|| |||||||||| ||||| || |||||||| |||| || || ||||| || |
Sbjct 32444485 CCTGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCACCACATAGAACTGGCAAAGT 32444544
Query 27346 GCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACG 27402
|| ||||| ||||| | ||||| |||| ||| ||||| || ||||| || |||| |
Sbjct 32444545 GCATGGCATGGAGGTAAGGCCATCAGAGG---AAGATCTTTTGGATTCCAAGCACACAGG 32444601
Query 27403 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 27462
||||| | ||||| ||||||||| | |||| ||| | | ||||||||||||||
Sbjct 32444602 ATGATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCT 32444661
Query 27463 ACCCCCATCCCCGAGTAGTCT-ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCA 27521
|| || || || || ||| | || | || |||| ||||| || ||||| | |||
Sbjct 32444662 ACTCCTTGACCTGAATAATCTGAATCT-TTATCTTTGTATTCTGCCCCAAAATGTCGCCA 32444720
Query 27522 TTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 27581
|| || || || || || || | ||||| ||||| |||| ||| ||| ||||
Sbjct 32444721 CTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTC 32444780
Query 27582 CAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641
||||||||||| |||||| ||||| ||||| || || || || || || || || ||
Sbjct 32444781 CAAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATT 32444840
Query 27642 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGAC 27701
| |||||||| || ||| ||||||| |||||| |||| || | ||||| || ||
Sbjct 32444841 AGCATTTGTGGATCCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAAC 32444900
Query 27702 CCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAA 27761
| ||||| || || || ||||| | | | |||| ||| | ||||| || ||
Sbjct 32444901 ACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCAGGCCGAA 32444960
Query 27762 CACGGACAAGACTCCCGTGCCCGTCCTGTC 27791
||| |||| | || |||||||| | |||
Sbjct 32444961 CACCGACAGGGTGCCGGTGCCCGTGCGGTC 32444990
>seq16
Length=47638275
Score = 125 bits (138), Expect = 5e-24
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| ||||||| ||| || |||||| | ||||| || ||||||||||| || || |||||
Sbjct 10752372 AGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGC 10752431
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| || ||||||||||| ||||| || |||||||| ||||
Sbjct 10752432 ACACCCAGGCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCACC 10752491
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371
|| || ||||| || | || ||||| ||||| | ||||| ||
Sbjct 10752492 ACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATCAG 10752535
Score = 86.0 bits (94), Expect = 5e-12
Identities = 115/160 (72%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 27497 TGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 27556
|||| ||||| || ||||| | ||| || || || || || || || | ||||| ||||
Sbjct 10755855 TGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTT 10755914
Query 27557 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 27616
| |||| ||| ||| ||||||||||||||| |||||| ||||| ||||| || |
Sbjct 10755915 CTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTT 10755974
Query 27617 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656
| || || || || || || || | |||||||| ||
Sbjct 10755975 TCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCC 10756014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369498013127240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |