Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq15 123 4e-23
seq9 116 5e-21
seq20 111 2e-19
>seq15
Length=51729835
Score = 123 bits (136), Expect = 4e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | |||
Sbjct 36813108 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAT 36813167
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| ||||||| || ||||||||||||||||| ||||| || || | | ||||||
Sbjct 36813168 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAACTG 36813227
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 36813228 TTTCTTATACCAT 36813240
Score = 111 bits (122), Expect = 2e-19
Identities = 124/166 (75%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| |||||||| ||||| | || || || || || || || || || ||
Sbjct 36828776 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGATG 36828835
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
|||||||||||||| | ||||| |||| || ||| ||||||| || |||||||||| |
Sbjct 36828836 GCATAGTCAGGATGCTTAGTAGTCAAGGTCGCAGCTGTTTCTGCAGCCAAAGTATCTAGT 36828895
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | ||| || || || | |||| || || || ||||||||||
Sbjct 36828896 TCCACAGTGGTCACCCCACTGTATAAGCCCTGGATTACTTTCATGG 36828941
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | |||||||| ||||| || ||||| || |||||||| || |||
Sbjct 36825320 GTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 36825379
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
||||| |||||| | || || ||||| || |||||||| |||| || | |||||||
Sbjct 36825380 TATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATTCCCACAGATACCCTCATCAAC 36825439
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| || |||| |||
Sbjct 36825440 ATATGTTGTGGTCTTTC 36825456
Score = 93.3 bits (102), Expect = 6e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009
|| || ||||| || || || || || | || | || || || || || || || ||
Sbjct 36815910 GAGCCCTTATAGGTCTCATATGTACCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAAG 36815969
Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068
|| || |||||||| || || || || | |||||| || | || | ||||| |||| ||
Sbjct 36815970 GCTCCATAATAAATGGTCTCAAAGATTTGCTTATTCAATAACTGG-GCTTCTGGACTCTC 36816028
Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128
||||||||| | |||||||| |||||||| || || || || ||||| ||||| ||
Sbjct 36816029 AAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 36816088
Query 76129 TCTATGTCTCTTATTGGA 76146
| ||| | ||||| ||
Sbjct 36816089 GCGATGGCGTTTATTTGA 36816106
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||
Sbjct 36820387 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 36820446
Query 76580 CACTC 76584
|| ||
Sbjct 36820447 CAGTC 36820451
>seq9
Length=63840602
Score = 116 bits (128), Expect = 5e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| |||||||| || || | || |
Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| |||||||||||||| || || |||||||| ||||| |||||||||||||| || || |
Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435
Query 46772 CGAC 46775
| ||
Sbjct 25234434 CTAC 25234431
Score = 96.9 bits (106), Expect = 5e-15
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| |||||||||||| |
Sbjct 25228418 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCATATATCAGG 25228359
Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212
||| ||||| ||||| || |||||||
Sbjct 25228358 ATACTGGATTGGAAAGATGACAAATC 25228333
>seq20
Length=39541208
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || ||||||||||| |||||||| | || || || |||
Sbjct 37615174 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCTTG 37615233
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| || || | ||| ||||| ||||| ||||| || ||||| || |||||||| ||
Sbjct 37615234 AGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGGCC 37615293
Query 46774 ACAAGTCTCTCTCC 46787
|| | | ||||||
Sbjct 37615294 ACCACCCGCTCTCC 37615307
Score = 87.8 bits (96), Expect = 3e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||||| || || || || | || || |||||||| ||||| |||||||| || ||
Sbjct 37616408 ATCTTTAATGTAGGTGTCAATGAGGAGGCTGTACATTTCGGAATGGATGTTTTCCATGGC 37616467
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
||||| || ||||| ||||| | |||||||||||||| || |||
Sbjct 37616468 GATCTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGCACTTCT 37616513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712916220172800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |