Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 123 4e-23 seq9 116 5e-21 seq20 111 2e-19 >seq15 Length=51729835 Score = 123 bits (136), Expect = 4e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | ||| Sbjct 36813108 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAT 36813167 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 36813168 TCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAACTG 36813227 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 36813228 TTTCTTATACCAT 36813240 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 36828776 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGATG 36828835 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||| | ||||| |||| || ||| ||||||| || |||||||||| | Sbjct 36828836 GCATAGTCAGGATGCTTAGTAGTCAAGGTCGCAGCTGTTTCTGCAGCCAAAGTATCTAGT 36828895 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||| || || || | |||| || || || |||||||||| Sbjct 36828896 TCCACAGTGGTCACCCCACTGTATAAGCCCTGGATTACTTTCATGG 36828941 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | |||||||| ||||| || ||||| || |||||||| || ||| Sbjct 36825320 GTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 36825379 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||| |||||| | || || ||||| || |||||||| |||| || | ||||||| Sbjct 36825380 TATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATTCCCACAGATACCCTCATCAAC 36825439 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 36825440 ATATGTTGTGGTCTTTC 36825456 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || ||||| || || || || || | || | || || || || || || || || Sbjct 36815910 GAGCCCTTATAGGTCTCATATGTACCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAAG 36815969 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTTGCGCTTCAAGACTATC 76068 || || |||||||| || || || || | |||||| || | || | ||||| |||| || Sbjct 36815970 GCTCCATAATAAATGGTCTCAAAGATTTGCTTATTCAATAACTGG-GCTTCTGGACTCTC 36816028 Query 76069 AAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGG 76128 ||||||||| | |||||||| |||||||| || || || || ||||| ||||| || Sbjct 36816029 AAAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 36816088 Query 76129 TCTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 36816089 GCGATGGCGTTTATTTGA 36816106 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 36820387 TCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 36820446 Query 76580 CACTC 76584 || || Sbjct 36820447 CAGTC 36820451 >seq9 Length=63840602 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | |||||||||||||| || || |||||||| ||||| |||||||||||||| || || | Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435 Query 46772 CGAC 46775 | || Sbjct 25234434 CTAC 25234431 Score = 96.9 bits (106), Expect = 5e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| |||||||||||| | Sbjct 25228418 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCATATATCAGG 25228359 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 ||| ||||| ||||| || ||||||| Sbjct 25228358 ATACTGGATTGGAAAGATGACAAATC 25228333 >seq20 Length=39541208 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| |||||||| | || || || ||| Sbjct 37615174 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCTTG 37615233 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || | ||| ||||| ||||| ||||| || ||||| || |||||||| || Sbjct 37615234 AGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGGCC 37615293 Query 46774 ACAAGTCTCTCTCC 46787 || | | |||||| Sbjct 37615294 ACCACCCGCTCTCC 37615307 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | || || |||||||| ||||| |||||||| || || Sbjct 37616408 ATCTTTAATGTAGGTGTCAATGAGGAGGCTGTACATTTCGGAATGGATGTTTTCCATGGC 37616467 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || ||||| ||||| | |||||||||||||| || ||| Sbjct 37616468 GATCTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGCACTTCT 37616513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916220172800