Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq16 89.7 2e-13 seq23 86.0 2e-12 >seq16 Length=47638275 Score = 89.7 bits (98), Expect = 2e-13 Identities = 112/149 (75%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || |||| |||||| |||| | ||| |||||||| | |||| ||| |||| || Sbjct 10752532 ATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGG-TGAATGGTGAGCTCTC 10752474 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | || ||| |||| | |||||| | |||| || || || || |||||||| Sbjct 10752473 CTGCCAGCTATACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCAG 10752414 Query 52229 CTATTCCTTGCTGAC--GCATCTGATTGC 52255 ||| ||| |||| || ||| ||||||| Sbjct 10752413 CTACTCCCTGCTCACCTGCA--TGATTGC 10752387 >seq23 Length=36106517 Score = 86.0 bits (94), Expect = 2e-12 Identities = 111/149 (74%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || |||| |||||| |||| | ||| |||||||| | |||| ||| |||| || Sbjct 32444567 ATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGG-TGAATGGTGAGCTCTC 32444509 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | | ||| |||| | |||||| | |||| || || || || |||||||| Sbjct 32444508 CTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCAG 32444449 Query 52229 CTATTCCTTGCTGAC--GCATCTGATTGC 52255 ||| ||| |||| || ||| ||||||| Sbjct 32444448 CTACTCCCTGCTCACCTGCA--TGATTGC 32444422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190091394924400