Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_031224.1
Length=59443
Score E
Sequences producing significant alignments: (Bits) Value
seq16 89.7 2e-13
seq23 86.0 2e-12
>seq16
Length=47638275
Score = 89.7 bits (98), Expect = 2e-13
Identities = 112/149 (75%), Gaps = 6/149 (4%)
Strand=Plus/Minus
Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168
||||| || |||| |||||| |||| | ||| |||||||| | |||| ||| |||| ||
Sbjct 10752532 ATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGG-TGAATGGTGAGCTCTC 10752474
Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228
||||| | || ||| |||| | |||||| | |||| || || || || ||||||||
Sbjct 10752473 CTGCCAGCTATACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCAG 10752414
Query 52229 CTATTCCTTGCTGAC--GCATCTGATTGC 52255
||| ||| |||| || ||| |||||||
Sbjct 10752413 CTACTCCCTGCTCACCTGCA--TGATTGC 10752387
>seq23
Length=36106517
Score = 86.0 bits (94), Expect = 2e-12
Identities = 111/149 (74%), Gaps = 6/149 (4%)
Strand=Plus/Minus
Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168
||||| || |||| |||||| |||| | ||| |||||||| | |||| ||| |||| ||
Sbjct 32444567 ATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGG-TGAATGGTGAGCTCTC 32444509
Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228
||||| | | ||| |||| | |||||| | |||| || || || || ||||||||
Sbjct 32444508 CTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCAG 32444449
Query 52229 CTATTCCTTGCTGAC--GCATCTGATTGC 52255
||| ||| |||| || ||| |||||||
Sbjct 32444448 CTACTCCCTGCTCACCTGCA--TGATTGC 32444422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190091394924400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |