Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq9 111 2e-19
seq24 86.0 7e-12
seq6 86.0 7e-12
>seq9
Length=63840602
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590
||||||| || || || | |||||| ||||| || | ||| ||||| | |||| ||| |
Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495
Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650
| | ||||||||| |||||||||||||| || |||||||| || || ||||| |||||||
Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435
Query 23651 CCAC 23654
| ||
Sbjct 25234434 CTAC 25234431
>seq24
Length=35080050
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464
|||| ||| |||||| ||||||| |||||||| ||| |||||||||||| ||||| || |
Sbjct 9942544 CTCCTGGGCTCAAGCGATTCTCCAGCCTCAGCTTCCCGAGTAGCTGGGACTACAGCCACA 9942485
Query 8465 AGCCACCACGCC 8476
|||||||||||
Sbjct 9942484 TGCCACCACGCC 9942473
>seq6
Length=67462845
Score = 86.0 bits (94), Expect = 7e-12
Identities = 74/91 (81%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464
|||| || |||||| || |||| |||||||||||| |||||||||||| ||| ||||
Sbjct 26350968 CTCCTGGACTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGACTACTGGCACG 26351027
Query 8465 AGCCACCACGCCAAGCTAATTTTTGTATTTT 8495
||||||| ||| |||| |||||||||||
Sbjct 26351028 CGCCACCATGCCCGGCTA--TTTTGTATTTT 26351056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521474702056000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |