Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq24 192 8e-44 seq6 116 5e-21 >seq24 Length=35080050 Score = 192 bits (212), Expect = 8e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| | ||||| || | ||||||||||||||| |||||||| ||||| ||||| Sbjct 28548656 GTCTGGAATAACTGCTCATCGCCCCATTCTGGATGTTCCTGTTTCAGCACATCACACACT 28548715 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| |||||||| ||||| |||||||| || ||||| |||| |||||| Sbjct 28548716 CTGTTATGTTCCCGCAGCCAGATGGTGGCATACATCATCAGGCCAGGCACCATGCCAAAG 28548775 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || ||| || |||| || || ||||||||| Sbjct 28548776 ACCTCCTGCCCCACAGCAAAGCGCAGGTGTTCAGGGACTTGAGGTGGGTAGATCATGGAG 28548835 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| ||||||||| | || ||||||| ||| || ||||| |||| Sbjct 28548836 ACCTGAGTGTCTTTGACTGTAGGAGGATACACTTCTCCATCAATTATCT 28548884 Score = 129 bits (142), Expect = 8e-25 Identities = 211/304 (69%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| ||||| ||||| |||| || ||||| || | Sbjct 28547045 GAACACTGAATGAGGTAAAAGGACAGCCCTTCACGTTATGGCAGATGAGGGACTGGATGG 28547104 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| |||| || || || || || || || || ||||||||||||||| Sbjct 28547105 AGGCAGTGTTGATGATCTTAAAACCTACTTCCCCACCAAAAGTACTGGGCTTCCAGTACT 28547164 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || |||||||| || |||| || ||||| | ||||| || || || | || | Sbjct 28547165 CAGGAGAGCAGATAGGATTACCCATAAGTCCTTTCAAAGAGAATGGTGCTCCAAGTTCTA 28547224 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 || | ||||| |||||||||| ||||| |||||||| |||| | | | |||| Sbjct 28547225 CCATTGTTTCACCAAAGATGGCGTCTGGACGCGGCTTTTCTACCAGAAGAGCAGGATACA 28547284 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 | |||| ||| |||| ||| || ||| || | || ||||| || ||||| |||| Sbjct 28547285 GTTCCATAGCGTCGATGTCACCATAAGCTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 28547344 Query 8583 CTGT 8586 |||| Sbjct 28547345 CTGT 28547348 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 28549827 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 28549886 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 ||||||||| ||||| || || |||| || | |||||| | || |||||||| ||||| Sbjct 28549887 AAACTGGTGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCCTGTGGATC 28549946 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | |||||| || ||||||| | | | ||| || ||||| Sbjct 28549947 AGGGATGAACTTTCTTCTTAGAAGAAACTTGTCCACAATTTCTTTTGAATCAGGAAGCTT 28550006 Query 9829 TGTTTTACCTG 9839 | | || |||| Sbjct 28550007 TTTCTTTCCTG 28550017 >seq6 Length=67462845 Score = 116 bits (128), Expect = 5e-21 Identities = 195/282 (69%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| |||| |||| |||||| || || | || || ||||||| || | Sbjct 8553879 GGACAAGTCTTGGTGTTGAGACAGACCAGCTTCTTCAGGGTGGCCGTCTTGACAATGTTG 8553938 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| | || || || || ||||| |||||||||||| |||| || |||||| ||| Sbjct 8553939 AAGCCCGCCTCCCCACCAAATGTGCTTGGCTTCCAGTACTCCGGAGAACAGATGGGATTC 8553998 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 | | ||| || |||||||| || |||||||| | || | || ||||| || || ||| Sbjct 8553999 CCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCTCCAAAAATG 8554058 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | ||| ||| || ||| || | | | || | ||| | ||||| || |||| |||| Sbjct 8554059 GAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGGTAGAACTCCAAGGCGTCGATGTCT 8554118 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || || || | || || || |||||||| |||||| Sbjct 8554119 CCATAGAGATCCTGCAACTCAGCTGCCATCTCCTTCTCTCCT 8554160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716858519641600