Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq24 192 8e-44
seq6 116 5e-21
>seq24
Length=35080050
Score = 192 bits (212), Expect = 8e-44
Identities = 180/229 (79%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||| | ||||| || | ||||||||||||||| |||||||| ||||| |||||
Sbjct 28548656 GTCTGGAATAACTGCTCATCGCCCCATTCTGGATGTTCCTGTTTCAGCACATCACACACT 28548715
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| ||||||| |||||||| ||||| |||||||| || ||||| |||| ||||||
Sbjct 28548716 CTGTTATGTTCCCGCAGCCAGATGGTGGCATACATCATCAGGCCAGGCACCATGCCAAAG 28548775
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | |||| || ||| || |||| || || |||||||||
Sbjct 28548776 ACCTCCTGCCCCACAGCAAAGCGCAGGTGTTCAGGGACTTGAGGTGGGTAGATCATGGAG 28548835
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| ||||||||| | || ||||||| ||| || ||||| ||||
Sbjct 28548836 ACCTGAGTGTCTTTGACTGTAGGAGGATACACTTCTCCATCAATTATCT 28548884
Score = 129 bits (142), Expect = 8e-25
Identities = 211/304 (69%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| | || || ||||| ||||| ||||| |||| || ||||| || |
Sbjct 28547045 GAACACTGAATGAGGTAAAAGGACAGCCCTTCACGTTATGGCAGATGAGGGACTGGATGG 28547104
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| |||| || || || || || || || || |||||||||||||||
Sbjct 28547105 AGGCAGTGTTGATGATCTTAAAACCTACTTCCCCACCAAAAGTACTGGGCTTCCAGTACT 28547164
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || |||||||| || |||| || ||||| | ||||| || || || | || |
Sbjct 28547165 CAGGAGAGCAGATAGGATTACCCATAAGTCCTTTCAAAGAGAATGGTGCTCCAAGTTCTA 28547224
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
|| | ||||| |||||||||| ||||| |||||||| |||| | | | ||||
Sbjct 28547225 CCATTGTTTCACCAAAGATGGCGTCTGGACGCGGCTTTTCTACCAGAAGAGCAGGATACA 28547284
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
| |||| ||| |||| ||| || ||| || | || ||||| || ||||| ||||
Sbjct 28547285 GTTCCATAGCGTCGATGTCACCATAAGCTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 28547344
Query 8583 CTGT 8586
||||
Sbjct 28547345 CTGT 28547348
Score = 114 bits (126), Expect = 2e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 28549827 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 28549886
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||||||||| ||||| || || |||| || | |||||| | || |||||||| |||||
Sbjct 28549887 AAACTGGTGGGTGAAGTGCTGAGCAAAGAATGTAAACATCATATTTGTGCCCTGTGGATC 28549946
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828
|| |||| | || | |||||| || ||||||| | | | ||| || |||||
Sbjct 28549947 AGGGATGAACTTTCTTCTTAGAAGAAACTTGTCCACAATTTCTTTTGAATCAGGAAGCTT 28550006
Query 9829 TGTTTTACCTG 9839
| | || ||||
Sbjct 28550007 TTTCTTTCCTG 28550017
>seq6
Length=67462845
Score = 116 bits (128), Expect = 5e-21
Identities = 195/282 (69%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||| |||| |||| |||||| || || | || || ||||||| || |
Sbjct 8553879 GGACAAGTCTTGGTGTTGAGACAGACCAGCTTCTTCAGGGTGGCCGTCTTGACAATGTTG 8553938
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| ||| | || || || || ||||| |||||||||||| |||| || |||||| |||
Sbjct 8553939 AAGCCCGCCTCCCCACCAAATGTGCTTGGCTTCCAGTACTCCGGAGAACAGATGGGATTC 8553998
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
| | ||| || |||||||| || |||||||| | || | || ||||| || || |||
Sbjct 8553999 CCTAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCTCCAAAAATG 8554058
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
| ||| ||| || ||| || | | | || | ||| | ||||| || |||| ||||
Sbjct 8554059 GAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGGTAGAACTCCAAGGCGTCGATGTCT 8554118
Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
|| || || || | || || || |||||||| ||||||
Sbjct 8554119 CCATAGAGATCCTGCAACTCAGCTGCCATCTCCTTCTCTCCT 8554160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716858519641600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |