Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq23 93.3 6e-14 >seq23 Length=36106517 Score = 93.3 bits (102), Expect = 6e-14 Identities = 281/433 (65%), Gaps = 6/433 (1%) Strand=Plus/Minus Query 50464 ACAGAAACAAAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGC 50523 ||||| | ||||||||||||| |||||||| || ||||| ||| |||||||||| || Sbjct 32444761 ACAGAGAAGAAGGAGATTTAGGCCCTGTTTATGGCTTTCAGTGGCGACATTTTGGGGCAG 32444702 Query 50524 GTTACATAAATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTA 50583 |||| | || || | |||| ||||||||| || ||||| ||||||||| | | Sbjct 32444701 AATACAAAGATAAAGATTCAGATTATTCAGGTCAAGGAGTAGATCAGCTGCAAAAAGTGA 32444642 Query 50584 TAACGACGTTGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAA 50643 | || | ||||| ||||| || || | | || | || || |||||||||| Sbjct 32444641 TCGACACAATCAAAACCAACCCAGATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAA 32444582 Query 50644 CCGATATAGATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAG 50703 ||| | || | | |||||||| || |||| | || || || |||| | Sbjct 32444581 AAGATCTTCCTCTGATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATG---TGG 32444525 Query 50704 ACAATGTT---TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTC 50760 |||| | | ||||| || | || || |||| || ||||| | || || | Sbjct 32444524 TGAATGGTGAGCTCTCCTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGC 32444465 Query 50761 CTTTCAACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGA 50820 | ||||| | || ||| | | | || | |||| || || | || ||| Sbjct 32444464 CCTTCAATATTGCCAGCTACTCCCTGCTCACCTGCATGATTGCGCACATCACCGGCCTGA 32444405 Query 50821 AACCGGGAGAATTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATG 50880 | || || || ||| | ||||| || ||||| || || |||||||| ||||| | || Sbjct 32444404 AGCCCGGCGATTTTGTACATACATTGGGAGATGCACACATTTACCTGAATCACATTGAGC 32444345 Query 50881 CTTTAAAGGAGCA 50893 || |||| | ||| Sbjct 32444344 CTCTAAAAGTGCA 32444332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667058189582400