Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eidolon_20helvum_20[genbank_20GCA_5F000465285.1_202013-09-13] 133,538 sequences; 1,837,754,460 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq109598 104 4e-17 >seq109598 Length=28830 Score = 104 bits (114), Expect = 4e-17 Identities = 105/133 (79%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| |||||||| ||||| || ||||||||| | || ||||| Sbjct 18509 GCATTTTTTGGAGCCCAGCTGAATTCTTTCATCCACGTGATTATGTACTCATACTATGGC 18450 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | || || | ||| || ||| |||||||| ||||| ||||||||| | || || || | Sbjct 18449 TTAGCTGCATTTGG-CCCATGGATTCAGAAA-TATCTTTGGTGGAAAAGATACCTGACCA 18392 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 18391 TGTTGCAGCTGGT 18379 Score = 96.9 bits (106), Expect = 6e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || || |||| ||||| | |||| ||||| || || || |||||||| || ||||| || Sbjct 19301 GCTTTGTGGTGGTACTTTGTATCTAAAGGAATTGAGTATTTGGATACAGTGTTTTTTATC 19242 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || ||||| ||| || || || ||| || || ||||||||||| | ||| |||||| Sbjct 19241 CTGAGGAAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTT 19182 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| || ||||| ||| | || || || || Sbjct 19181 ACATTGTGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 19141 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| |||||| | | | || || || || || |||| |||||| |||||||| || Sbjct 16104 GGTTCAGTTCTTTGTGACCATTGGGCACACAGCACTGTCTCTTTACACTGATTGCCCCTT 16045 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | ||| |||| | || || |||||||| || ||| Sbjct 16044 CCCAAAATGGATGCACTGGGCTCTAATTGTCTACGCAATCAGCTTCATATTTCTCTTTCT 15985 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | |||||||| Sbjct 15984 TAACTTCTATATTCGGACATACAA 15961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921655776821520