Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eptesicus_20fuscus_20[refseq_20GCF_5F000308155.1_202012-11-08] 6,789 sequences; 2,026,629,342 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 2e-15 >seq1 Length=65909399 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/139 (78%), Gaps = 5/139 (4%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||||| ||||| || || ||||| ||||||||| | || ||||| Sbjct 18010568 GCATTTTTCGGAGCCCAGCTGAATTCCTTCATTCATGTGATTATGTACTCATACTATGGG 18010509 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||| ||||||||| ||||||||||| || || || | Sbjct 18010508 CTAACTGCATTTGGCCC-ATGGATTCA-AAAGTATCTTTGGTGGAAACGATACCTGACCA 18010451 Query 52175 TAATGCAGTTGGTACAGTT 52193 | ||||| ||||| |||| Sbjct 18010450 TGTTGCAGATGGTA-AGTT 18010433 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| ||||| || || || ||||| || || ||||| || || ||| Sbjct 18012406 TGGTGGTACTTTGTATCTAAAGGAATTGAGTATTTGGACACAGTGTTTTTTATCCTAAGG 18012347 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || |||||| || ||||||||||| | ||| |||||||| | Sbjct 18012346 AAGAAAAACAACCAAGTCTCTTTTCTTCATGTATATCATCACTGTACAATGTTTACATTG 18012287 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| | || || || || Sbjct 18012286 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 18012252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923118455211560